Anchorpoints
- Gene id
- AL3G06190
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT5G19080 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G06140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). RING/U-box superfamily protein Paralog of LOG2 (At3g09770), a ubiquitin ligase that regulates amino acid export. | 5 | + | View |
AT3G06140 | Paralog of LOG2 (At3g09770), a ubiquitin ligase that regulates amino acid export. RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G19080.1); Has 7743 Blast hits to 5478 proteins in 376 species: Archae - 2; Bacteria - 144; Metazoa - 2405; Fungi - 531; Plants - 3352; Viruses - 272; Other Eukaryotes - 1037 (source: NCBI BLink). | 3 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR02G34100 | No description available. | A02 | - | View |
BR10G15730 | No description available. | A10 | - | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV0G17460 | No description available. | 0002.scaffold00003 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL05G06070 | No description available. | Chr5 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00006G06690 | No description available. | CM3.5_scaffold00006 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00016G00240 | No description available. | supercontig_16 | - | View |
CP00048G00200 | No description available. | supercontig_48 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_003G05360 | No description available. | scaffold_3 | - | View |
CRU_006G16970 | No description available. | scaffold_6 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00011G01580 | No description available. | scaffold00011 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0008G29080 | No description available. | scaffold_8 | - | View |
EG0008G36250 | No description available. | scaffold_8 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV4G15450 | RING finger protein 157 (probable) | LG4 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM13G27930 | No description available. | Gm13 | - | View |
GM15G11100 | No description available. | Gm15 | + | View |
GM17G02030 | No description available. | Gm17 | - | View |
GM07G38670 | No description available. | Gm07 | + | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ6G022820 | No description available. | chr6 | - | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD16G013690 | No description available. | 16 | + | View |
MD13G017560 | No description available. | 13 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME05019G00050 | No description available. | scaffold05019 | - | View |
ME01551G02630 | No description available. | scaffold01551 | - | View |
ME03614G04490 | No description available. | scaffold03614 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT2G022210 | zinc finger C C3HC4 type (RING finger) protein | chr2 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_001G14420 | No description available. | scaffold_1 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT13G02540 | No description available. | Chr13 | - | View |
PT08G20270 | No description available. | Chr08 | + | View |
PT10G03060 | No description available. | Chr10 | - | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29844G01530 | No description available. | 29844 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL01G080080 | RING finger protein B (AHRD V1 *--- RNGB_DICDI)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-type | ch01 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST01G022940 | RING finger protein B (AHRD V1 *--- RNGB_DICDI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type | chr01 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0004G22500 | No description available. | scaffold_4 | + | View |
TC0005G30460 | No description available. | scaffold_5 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP3G05090 | similar to AT3G06140|zinc finger (C3HC4-type RING finger) family protein | ch3-1 | - | View |
TP6G25300 | similar to AT5G19080|zinc finger (C3HC4-type RING finger) family protein | ch6-6 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV14G00160 | name=GSVIVG01000020001; | chr14 | + | View |
VV05G04190 | name=GSVIVG01017889001; | chr5 | + | View |