Anchorpoints

Gene id
AL3G06190
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL6G19230No description available.scaffold_6+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G19080RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G06140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). RING/U-box superfamily protein Paralog of LOG2 (At3g09770), a ubiquitin ligase that regulates amino acid export.5+View
AT3G06140Paralog of LOG2 (At3g09770), a ubiquitin ligase that regulates amino acid export. RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G19080.1); Has 7743 Blast hits to 5478 proteins in 376 species: Archae - 2; Bacteria - 144; Metazoa - 2405; Fungi - 531; Plants - 3352; Viruses - 272; Other Eukaryotes - 1037 (source: NCBI BLink).3-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR02G34100No description available.A02-View
BR10G15730No description available.A10-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV0G17460No description available.0002.scaffold00003-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G06070No description available.Chr5-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00006G06690No description available.CM3.5_scaffold00006-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00016G00240No description available.supercontig_16-View
CP00048G00200No description available.supercontig_48+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G05360No description available.scaffold_3-View
CRU_006G16970No description available.scaffold_6+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00011G01580No description available.scaffold00011-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0008G29080No description available.scaffold_8-View
EG0008G36250No description available.scaffold_8+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV4G15450RING finger protein 157 (probable)LG4-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM13G27930No description available.Gm13-View
GM15G11100No description available.Gm15+View
GM17G02030No description available.Gm17-View
GM07G38670No description available.Gm07+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ6G022820No description available.chr6-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD16G013690No description available.16+View
MD13G017560No description available.13+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME05019G00050No description available.scaffold05019-View
ME01551G02630No description available.scaffold01551-View
ME03614G04490No description available.scaffold03614+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT2G022210zinc finger C C3HC4 type (RING finger) proteinchr2+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G14420No description available.scaffold_1+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT13G02540No description available.Chr13-View
PT08G20270No description available.Chr08+View
PT10G03060No description available.Chr10-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29844G01530No description available.29844+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL01G080080RING finger protein B (AHRD V1 *--- RNGB_DICDI)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-typech01-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST01G022940RING finger protein B (AHRD V1 *--- RNGB_DICDI); contains Interpro domain(s) IPR001841 Zinc finger, RING-typechr01+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0004G22500No description available.scaffold_4+View
TC0005G30460No description available.scaffold_5-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP3G05090similar to AT3G06140|zinc finger (C3HC4-type RING finger) family proteinch3-1-View
TP6G25300similar to AT5G19080|zinc finger (C3HC4-type RING finger) family proteinch6-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G00160name=GSVIVG01000020001;chr14+View
VV05G04190name=GSVIVG01017889001;chr5+View


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Gene id
Species
Description
Chromosome
Strand