PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: AL2G27520
Organism: Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AL1G17910	No description available.	scaffold_1	+	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G78510	solanesyl diphosphate synthase 1 Encodes one of the two paralogous solanesyl diphosphate synthases - SPS1 (At1g78510) and SPS2 (At1g17050) - that assemble the side-chain of plastoquinone-9 in plastids. solanesyl diphosphate synthase 1 (SPS1); CONTAINS InterPro DOMAIN/s: Solanesyl diphosphate synthase (InterPro:IPR014120), Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: solanesyl diphosphate synthase 2 (TAIR:AT1G17050.1); Has 16774 Blast hits to 16749 proteins in 2959 species: Archae - 341; Bacteria - 9542; Metazoa - 459; Fungi - 581; Plants - 425; Viruses - 0; Other Eukaryotes - 5426 (source: NCBI BLink).	1	-	View
AT1G17050	Encodes one of the two paralogous solanesyl diphosphate synthases - SPS1 (At1g78510) and SPS2 (At1g17050) - that assemble the side-chain of plastoquinone-9 in plastids. solanesyl diphosphate synthase 2 solanesyl diphosphate synthase 2 (SPS2); FUNCTIONS IN: trans-octaprenyltranstransferase activity; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Solanesyl diphosphate synthase (InterPro:IPR014120), Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: solanesyl diphosphate synthase 1 (TAIR:AT1G78510.1); Has 16766 Blast hits to 16738 proteins in 2950 species: Archae - 341; Bacteria - 9538; Metazoa - 427; Fungi - 613; Plants - 416; Viruses - 0; Other Eukaryotes - 5431 (source: NCBI BLink).	1	+	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR06G12100	No description available.	A06	+	View
BR07G33240	No description available.	A07	-	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL07G15010	No description available.	Chr7	+	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM00027G00820	No description available.	CM3.5_scaffold00027	+	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_001G16020	No description available.	scaffold_1	+	View
CRU_002G23950	No description available.	scaffold_2	-	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0006G27230	No description available.	scaffold_6	-	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM13G33710	No description available.	Gm13	-	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR13G17610	No description available.	Chr13	+	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD11G024730	No description available.	11	+	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT2G072470	solanesyl diphosphate synthase	chr2	-	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_004G14590	No description available.	scaffold_4	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT01G38050	No description available.	Chr01	-	View
PT11G09950	No description available.	Chr11	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL07G061990	Solanesyl diphosphate synthase (AHRD V1 ***- Q09IV6_SOLLC)%3B contains Interpro domain(s) IPR014120 Solanesyl diphosphate synthase	ch07	-	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST07G025320	Solanesyl diphosphate synthase (AHRD V1 ***- Q09IV6_SOLLC); contains Interpro domain(s) IPR014120 Solanesyl diphosphate synthase	chr07	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP5G33600	similar to AT1G78510\|SPS1 (solanesyl diphosphate synthase 1)	ch5-7	-	View
TP1G15170	similar to AT1G17050\|SPS2 (Solanesyl diphosphate synthase 2)	ch1-1	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV19G00770	name=GSVIVG01014066001;	chr19	-	View