Anchorpoints
- Gene id
- AL2G20980
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL1G24100 | No description available. | scaffold_1 | + | View |
AL3G15170 | No description available. | scaffold_3 | - | View |
AL1G49000 | No description available. | scaffold_1 | + | View |
AL6G31270 | No description available. | scaffold_6 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G22500 | RING/U-box superfamily protein Gene encodes a putative C3HC4-type RING zinc finger factor. it is induced in response to light and ascorbate stimulus. RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1); Has 9627 Blast hits to 9604 proteins in 288 species: Archae - 0; Bacteria - 2; Metazoa - 2532; Fungi - 813; Plants - 4919; Viruses - 76; Other Eukaryotes - 1285 (source: NCBI BLink). | 1 | + | View |
AT3G14320 | Zinc finger, C3HC4 type (RING finger) family protein Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G53820.1); Has 9779 Blast hits to 9754 proteins in 298 species: Archae - 0; Bacteria - 2; Metazoa - 2465; Fungi - 778; Plants - 5098; Viruses - 64; Other Eukaryotes - 1372 (source: NCBI BLink). | 3 | - | View |
AT1G72200 | RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G22500.1); Has 9343 Blast hits to 9316 proteins in 282 species: Archae - 0; Bacteria - 4; Metazoa - 2295; Fungi - 806; Plants - 4899; Viruses - 51; Other Eukaryotes - 1288 (source: NCBI BLink). | 1 | - | View |
AT4G09100 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G35000.1); Has 9246 Blast hits to 9221 proteins in 278 species: Archae - 0; Bacteria - 2; Metazoa - 2331; Fungi - 762; Plants - 4890; Viruses - 29; Other Eukaryotes - 1232 (source: NCBI BLink). RING/U-box superfamily protein | 4 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR05G28660 | No description available. | A05 | + | View |
BR07G21280 | No description available. | A07 | + | View |
BR02G21370 | No description available. | A02 | - | View |
BR07G28390 | No description available. | A07 | - | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV7G01880 | No description available. | Bvchr7.sca021 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL09G01140 | No description available. | Chr9 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00054G00670 | No description available. | CM3.5_scaffold00054 | - | View |
CM00011G01930 | No description available. | CM3.5_scaffold00011 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00025G02000 | No description available. | supercontig_25 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_003G13350 | No description available. | scaffold_3 | - | View |
CRU_001G21100 | No description available. | scaffold_1 | + | View |
CRU_002G17930 | No description available. | scaffold_2 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0009G18270 | No description available. | scaffold_9 | - | View |
EG0010G22460 | No description available. | scaffold_10 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV0G17130 | RING-H2 finger protein ATL1P (probable) | scf0513160 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM07G05190 | No description available. | Gm07 | - | View |
GM16G01700 | No description available. | Gm16 | - | View |
GM03G42390 | No description available. | Gm03 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR06G21730 | No description available. | Chr06 | - | View |
GR11G05460 | No description available. | Chr11 | + | View |
GR10G17290 | No description available. | Chr10 | + | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ1G075660 | No description available. | chr1 | - | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD09G016470 | No description available. | 9 | + | View |
MD15G015410 | No description available. | 15 | - | View |
MD16G006450 | No description available. | 16 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME10504G00240 | No description available. | scaffold10504 | + | View |
ME05875G01620 | No description available. | scaffold05875 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT8G023400 | zinc finger C C3HC4 type (RING finger) protein | chr8 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS11G39640 | zinc finger, C3HC4 type domain containing protein, expressed | 11 | + | View |
OS03G28040 | zinc finger, C3HC4 type domain containing protein, expressed | 3 | + | View |
OS07G42610 | RING finger protein, putative, expressed | 7 | - | View |
OS06G09310 | zinc finger, C3HC4 type domain containing protein, expressed | 6 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_003G01750 | No description available. | scaffold_3 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL03G123680 | Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch03 | - | View |
SL06G063110 | Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch06 | - | View |
SL12G055710 | RING finger protein 38 (AHRD V1 *-*- RNF38_HUMAN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch12 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST06G022170 | RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr06 | - | View |
ST03G034290 | RING finger protein 44 (AHRD V1 *-*- E2BB02_9HYME); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr03 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0006G13000 | No description available. | scaffold_6 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G19980 | similar to AT1G22500|zinc finger (C3HC4-type RING finger) family protein | ch1-1 | + | View |
TP5G27290 | similar to AT1G72200|zinc finger (C3HC4-type RING finger) family protein | ch5-6 | - | View |
TP3G12620 | similar to AT1G53820|zinc finger (C3HC4-type RING finger) family protein | ch3-1 | - | View |
TP1G40310 | similar to AT1G53820|zinc finger (C3HC4-type RING finger) family protein | ch1-2 | + | View |