Anchorpoints

Gene id
AL2G20980
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL1G24100No description available.scaffold_1+View
AL3G15170No description available.scaffold_3-View
AL1G49000No description available.scaffold_1+View
AL6G31270No description available.scaffold_6+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G22500RING/U-box superfamily protein Gene encodes a putative C3HC4-type RING zinc finger factor. it is induced in response to light and ascorbate stimulus. RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1); Has 9627 Blast hits to 9604 proteins in 288 species: Archae - 0; Bacteria - 2; Metazoa - 2532; Fungi - 813; Plants - 4919; Viruses - 76; Other Eukaryotes - 1285 (source: NCBI BLink).1+View
AT3G14320Zinc finger, C3HC4 type (RING finger) family protein Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G53820.1); Has 9779 Blast hits to 9754 proteins in 298 species: Archae - 0; Bacteria - 2; Metazoa - 2465; Fungi - 778; Plants - 5098; Viruses - 64; Other Eukaryotes - 1372 (source: NCBI BLink).3-View
AT1G72200RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G22500.1); Has 9343 Blast hits to 9316 proteins in 282 species: Archae - 0; Bacteria - 4; Metazoa - 2295; Fungi - 806; Plants - 4899; Viruses - 51; Other Eukaryotes - 1288 (source: NCBI BLink).1-View
AT4G09100RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G35000.1); Has 9246 Blast hits to 9221 proteins in 278 species: Archae - 0; Bacteria - 2; Metazoa - 2331; Fungi - 762; Plants - 4890; Viruses - 29; Other Eukaryotes - 1232 (source: NCBI BLink). RING/U-box superfamily protein4+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR05G28660No description available.A05+View
BR07G21280No description available.A07+View
BR02G21370No description available.A02-View
BR07G28390No description available.A07-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV7G01880No description available.Bvchr7.sca021+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL09G01140No description available.Chr9-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00054G00670No description available.CM3.5_scaffold00054-View
CM00011G01930No description available.CM3.5_scaffold00011-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00025G02000No description available.supercontig_25-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G13350No description available.scaffold_3-View
CRU_001G21100No description available.scaffold_1+View
CRU_002G17930No description available.scaffold_2-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0009G18270No description available.scaffold_9-View
EG0010G22460No description available.scaffold_10+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G17130RING-H2 finger protein ATL1P (probable)scf0513160-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM07G05190No description available.Gm07-View
GM16G01700No description available.Gm16-View
GM03G42390No description available.Gm03+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR06G21730No description available.Chr06-View
GR11G05460No description available.Chr11+View
GR10G17290No description available.Chr10+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ1G075660No description available.chr1-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD09G016470No description available.9+View
MD15G015410No description available.15-View
MD16G006450No description available.16+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME10504G00240No description available.scaffold10504+View
ME05875G01620No description available.scaffold05875-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT8G023400zinc finger C C3HC4 type (RING finger) proteinchr8-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS11G39640zinc finger, C3HC4 type domain containing protein, expressed11+View
OS03G28040zinc finger, C3HC4 type domain containing protein, expressed3+View
OS07G42610RING finger protein, putative, expressed7-View
OS06G09310zinc finger, C3HC4 type domain containing protein, expressed6+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_003G01750No description available.scaffold_3+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL03G123680Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech03-View
SL06G063110Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech06-View
SL12G055710RING finger protein 38 (AHRD V1 *-*- RNF38_HUMAN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech12-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST06G022170RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr06-View
ST03G034290RING finger protein 44 (AHRD V1 *-*- E2BB02_9HYME); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr03+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0006G13000No description available.scaffold_6-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G19980similar to AT1G22500|zinc finger (C3HC4-type RING finger) family proteinch1-1+View
TP5G27290similar to AT1G72200|zinc finger (C3HC4-type RING finger) family proteinch5-6-View
TP3G12620similar to AT1G53820|zinc finger (C3HC4-type RING finger) family proteinch3-1-View
TP1G40310similar to AT1G53820|zinc finger (C3HC4-type RING finger) family proteinch1-2+View


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Description
Chromosome
Strand