Anchorpoints

Gene id
AL2G01300
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL7G36350No description available.scaffold_7+View
AL4G34020No description available.scaffold_4-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G75440ubiquitin-conjugating enzyme 16 (UBC16); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 18 (TAIR:AT5G42990.1); Has 8796 Blast hits to 8793 proteins in 382 species: Archae - 0; Bacteria - 2; Metazoa - 3895; Fungi - 1929; Plants - 1614; Viruses - 20; Other Eukaryotes - 1336 (source: NCBI BLink). ubiquitin-conjugating enzyme 161+View
AT1G63800ubiquitin-conjugating enzyme 5 (UBC5); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Ubiquitin-conjugating enzyme (InterPro:IPR015581); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 4 (TAIR:AT5G41340.1); Has 8752 Blast hits to 8751 proteins in 386 species: Archae - 0; Bacteria - 0; Metazoa - 4011; Fungi - 1743; Plants - 1591; Viruses - 20; Other Eukaryotes - 1387 (source: NCBI BLink). ubiquitin-conjugating enzyme 51-View
AT2G46030Ubiquitin conjugating enzyme E2 ubiquitin-conjugating enzyme 6 (UBC6); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Ubiquitin-conjugating enzyme (InterPro:IPR015581); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 5 (TAIR:AT1G63800.1); Has 8701 Blast hits to 8700 proteins in 389 species: Archae - 0; Bacteria - 2; Metazoa - 3940; Fungi - 1759; Plants - 1590; Viruses - 20; Other Eukaryotes - 1390 (source: NCBI BLink). ubiquitin-conjugating enzyme 62-View
AT5G41340ubiquitin conjugating enzyme 4 (UBC4); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Ubiquitin-conjugating enzyme (InterPro:IPR015581); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 5 (TAIR:AT1G63800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ubiquitin conjugating enzyme 4 Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated.5-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV5G07300No description available.Bvchr5.sca002+View
BV1G06370No description available.Bvchr1.sca001+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G01720No description available.Chr5+View
CL01G02360No description available.Chr1+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00005G06650No description available.CM3.5_scaffold00005-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00214G00120No description available.supercontig_214+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_007G32800No description available.scaffold_7+View
CRU_002G21060No description available.scaffold_2+View
CRU_002G01080No description available.scaffold_2+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00009G01150No description available.scaffold00009-View
CS00002G04760No description available.scaffold00002+View
CS00001G03290No description available.scaffold00001-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0005G05500No description available.scaffold_5-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV5G03160Ubiquitin-conjugating enzyme E2 4 (similar to)LG5-View
FV7G07620Ubiquitin-conjugating enzyme E2-23 kDa (similar to)LG7+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM08G01940No description available.Gm08-View
GM18G46940No description available.Gm18-View
GM16G03940No description available.Gm16+View
GM07G07540No description available.Gm07+View
GM05G37650No description available.Gm05+View
GM09G39370No description available.Gm09+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR09G19840No description available.Chr09-View
GR03G15730No description available.Chr03+View
GR08G24800No description available.Chr08-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD12G015390No description available.12-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME03614G00550No description available.scaffold03614+View
ME02658G01120No description available.scaffold02658+View
ME03581G01620No description available.scaffold03581+View
ME05280G00330No description available.scaffold05280+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT8G098595ubiquitin-conjugating enzymechr8-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G38170No description available.scaffold_1-View
PPE_002G16830No description available.scaffold_2-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT03G12970No description available.Chr03-View
PT02G16100No description available.Chr02-View
PT05G23210No description available.Chr05+View
PT14G08660No description available.Chr14-View
PT02G03080No description available.Chr02-View
PT01G10190No description available.Chr01+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30170G04560No description available.30170+View
RC30190G04120No description available.30190-View
RC30174G03060No description available.30174-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL01G094810Ubiquitin-conjugating enzyme (AHRD V1 **** D2VN46_NAEGR)%3B contains Interpro domain(s) IPR015581 Ubiquitin-conjugating enzymech01-View
SL04G080810Ubiquitin-conjugating enzyme E2 W (AHRD V1 **** B6SI81_MAIZE)%3B contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme%2C E2ch04-View
SL08G081270Ubiquitin-conjugating enzyme (AHRD V1 ***- D2VN46_NAEGR)%3B contains Interpro domain(s) IPR015581 Ubiquitin-conjugating enzymech08-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST04G034210Ubiquitin-conjugating enzyme E2 W (AHRD V1 **** B6SI81_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2chr04-View
ST01G032200Ubiquitin-conjugating enzyme h (AHRD V1 **** E9DYP4_9HYPO); contains Interpro domain(s) IPR015581 Ubiquitin-conjugating enzymechr01-View
ST08G029150Ubiquitin-conjugating enzyme h (AHRD V1 **** E9DYP4_9HYPO); contains Interpro domain(s) IPR015581 Ubiquitin-conjugating enzymechr08+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G02510No description available.scaffold_1+View
TC0001G35410No description available.scaffold_1+View
TC0003G27750No description available.scaffold_3-View
TC0008G03300No description available.scaffold_8+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G30590similar to AT1G75440|UBC16 (ubiquitin-conjugating enzyme 16)ch5-7+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G09560name=GSVIVG01009784001;chr18-View
VV02G03390name=GSVIVG01019387001;chr2+View
VV15G05160name=GSVIVG01026953001;chr15+View


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Gene id
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Description
Chromosome
Strand