Anchorpoints

Gene id
AL2G00770
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL7G35940No description available.scaffold_7-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G41700One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2 ubiquitin conjugating enzyme 8 (UBC8); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 28 (TAIR:AT1G64230.2); Has 10671 Blast hits to 10632 proteins in 401 species: Archae - 0; Bacteria - 4; Metazoa - 4624; Fungi - 2337; Plants - 1940; Viruses - 26; Other Eukaryotes - 1740 (source: NCBI BLink). ubiquitin conjugating enzyme 85+View
AT1G75440ubiquitin-conjugating enzyme 16 (UBC16); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 18 (TAIR:AT5G42990.1); Has 8796 Blast hits to 8793 proteins in 382 species: Archae - 0; Bacteria - 2; Metazoa - 3895; Fungi - 1929; Plants - 1614; Viruses - 20; Other Eukaryotes - 1336 (source: NCBI BLink). ubiquitin-conjugating enzyme 161+View
AT1G64230ubiquitin-conjugating enzyme 28 ubiquitin-conjugating enzyme 28 (UBC28); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 8 (TAIR:AT5G41700.5); Has 10460 Blast hits to 10419 proteins in 398 species: Archae - 0; Bacteria - 4; Metazoa - 4543; Fungi - 2213; Plants - 1965; Viruses - 26; Other Eukaryotes - 1709 (source: NCBI BLink).1+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G12350No description available.A09-View
BR09G11740No description available.A09+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV1G08640No description available.Bvchr1.sca001+View
BV5G06520No description available.Bvchr5.sca002-View
BV1G05600No description available.Bvchr1.sca001-View
BV3G02680No description available.Bvchr3.sca003-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G00500No description available.Chr1-View
CL01G01940No description available.Chr1-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00005G07100No description available.CM3.5_scaffold00005+View
CM00005G08510No description available.CM3.5_scaffold00005+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00122G00250No description available.supercontig_122+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_002G21060No description available.scaffold_2+View
CRU_007G32440No description available.scaffold_7-View
CRU_002G00590No description available.scaffold_2-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00002G04760No description available.scaffold00002+View
CS00009G01850No description available.scaffold00009+View
CS00001G03970No description available.scaffold00001+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0005G07080No description available.scaffold_5+View
EG0011G02880No description available.scaffold_11+View
EG0004G14250No description available.scaffold_4-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV5G04520SUMO-conjugating enzyme UBC9LG5+View
FV7G06360Ubiquitin-conjugating enzyme E2-17 kDa (similar to)LG7-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR04G13590No description available.Chr04-View
GR09G19840No description available.Chr09-View
GR07G10550No description available.Chr07+View
GR03G08250No description available.Chr03-View
GR08G25210No description available.Chr08+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD12G015390No description available.12-View
MD01G021320No description available.1+View
MD07G019500No description available.7+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME03581G01040No description available.scaffold03581-View
ME06089G00360No description available.scaffold06089-View
ME05280G01080No description available.scaffold05280-View
ME00341G00290No description available.scaffold00341-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G38170No description available.scaffold_1-View
PPE_005G12260No description available.scaffold_5+View
PPE_002G17660No description available.scaffold_2+View
PPE_002G29330No description available.scaffold_2+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT12G03300No description available.Chr12-View
PT05G23210No description available.Chr05+View
PT02G03080No description available.Chr02-View
PT01G09490No description available.Chr01-View
PT03G13620No description available.Chr03+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30170G04560No description available.30170+View
RC30190G04990No description available.30190+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL01G095490Ubiquitin-conjugating enzyme E2 8 (AHRD V1 **** UBC8_ARATH)%3B contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme%2C E2ch01+View
SL08G008220Ubiquitin-conjugating enzyme E2 10 (AHRD V1 ***- UBC10_ARATH)%3B contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme%2C E2ch08+View
SL08G081950Ubiquitin-conjugating enzyme E2 10 (AHRD V1 **** UBC10_ARATH)%3B contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme%2C E2ch08+View
SL04G080810Ubiquitin-conjugating enzyme E2 W (AHRD V1 **** B6SI81_MAIZE)%3B contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme%2C E2ch04-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST04G034210Ubiquitin-conjugating enzyme E2 W (AHRD V1 **** B6SI81_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2chr04-View
ST08G028440Ubiquitin-conjugating enzyme (AHRD V1 **** E9BXA2_9EUKA); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2chr08-View
ST01G032940Ubiquitin-conjugating enzyme (AHRD V1 **** E9BXA2_9EUKA); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2chr01+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G34510No description available.scaffold_1-View
TC0003G19240No description available.scaffold_3+View
TC0003G28690No description available.scaffold_3+View
TC0008G03300No description available.scaffold_8+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G30590similar to AT1G75440|UBC16 (ubiquitin-conjugating enzyme 16)ch5-7+View
TP2G00510similar to AT1G64230|ubiquitin-conjugating enzyme, putativech2-1-View
TP7G00370similar to AT5G41700|UBC8 (UBIQUITIN CONJUGATING ENZYME 8)ch7-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV16G06940name=GSVIVG01028729001;chr16-View
VV02G04240name=GSVIVG01019484001;chr2+View
VV18G09560name=GSVIVG01009784001;chr18-View


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Gene id
Species
Description
Chromosome
Strand