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Functional clusters
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BLAST
WorkbenchAnchorpoints
- Gene id
- AL1G46220
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT1G51460 | ABC-2 type transporter family protein ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G21090.1); Has 379847 Blast hits to 348933 proteins in 4101 species: Archae - 6887; Bacteria - 304547; Metazoa - 7636; Fungi - 6582; Plants - 5428; Viruses - 18; Other Eukaryotes - 48749 (source: NCBI BLink). | 1 | - | View |
| AT3G21080 | ABC transporter-related; BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G21090.1); Has 247 Blast hits to 244 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 247; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ABC transporter-related | 3 | - | View |
Brassica rapa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BR05G22600 | No description available. | A05 | + | View |
| BR06G02380 | No description available. | A06 | + | View |
| BR05G17800 | No description available. | A05 | + | View |
Beta vulgaris
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BV4G13260 | No description available. | Bvchr4.sca001 | - | View |
Carica papaya
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CP00084G00290 | No description available. | supercontig_84 | + | View |
Capsella rubella
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CRU_003G20000 | No description available. | scaffold_3 | - | View |
| CRU_001G38430 | No description available. | scaffold_1 | - | View |
Citrus sinensis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CS00054G00160 | No description available. | scaffold00054 | - | View |
Eucalyptus grandis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| EG0010G06530 | No description available. | scaffold_10 | + | View |
Fragaria vesca
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| FV2G48630 | ABC transporter G family member 12 (ABC transporter ABCG.12) (putative) | LG2 | - | View |
Malus domestica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MD12G006550 | No description available. | 12 | - | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ME10963G00160 | No description available. | scaffold10963 | + | View |
| ME04681G00580 | No description available. | scaffold04681 | - | View |
Medicago truncatula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MT4G076900 | white-brown-complex ABC transporter family protein | chr4 | + | View |
| MT7G091350 | ABC-2 type transporter family protein | chr7 | + | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT09G05120 | No description available. | Chr09 | + | View |
| PT16G05660 | No description available. | Chr16 | - | View |
| PT01G25580 | No description available. | Chr01 | + | View |
Ricinus communis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| RC30169G02350 | No description available. | 30169 | - | View |
Solanum lycopersicum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL11G065350 | ABC transporter G family member 15 (AHRD V1 ***- AB15G_ARATH)%3B contains Interpro domain(s) IPR003439 ABC transporter-like | ch11 | + | View |
Solanum tuberosum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ST11G023280 | ABC transporter ATP-binding protein YxdL (AHRD V1 *-** YXDL_BACSU); contains Interpro domain(s) IPR003439 ABC transporter-like | chr11 | + | View |
Theobroma cacao
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TC0009G23430 | No description available. | scaffold_9 | - | View |
Thellungiella parvula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TP3G19040 | similar to AT3G21090|ABC transporter family protein | ch3-1 | - | View |
| TP1G38130 | similar to AT1G51460|ABC transporter family protein | ch1-2 | - | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV06G09280 | name=GSVIVG01031529001; | chr6 | + | View |