Anchorpoints

Gene id
AL1G26840
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL5G08530No description available.scaffold_5-View
AL2G17780No description available.scaffold_2+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G26770expansin A10 expansin A10 (EXPA10); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 2216 Blast hits to 2213 proteins in 165 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 52; Plants - 2112; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.1+View
AT3G29030expansin A5 (EXPA5); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2184 Blast hits to 2181 proteins in 162 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 43; Plants - 2080; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin A53-View
AT1G69530expansin A1 Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2216 Blast hits to 2212 proteins in 170 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 48; Plants - 2114; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).1+View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00110G00620No description available.scaffold00110-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR07G26310No description available.A07+View
BR06G34660No description available.A06+View
BR09G30110No description available.A09+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL04G11960No description available.Chr4+View
CL05G25140No description available.Chr5+View
CL06G16680No description available.Chr6+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00001G00820No description available.CM3.5_scaffold00001-View
CM00016G04340No description available.CM3.5_scaffold00016-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00001G00460No description available.supercontig_1-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G23290No description available.scaffold_1-View
CRU_005G01780No description available.scaffold_5-View
CRU_002G15220No description available.scaffold_2+View
CRU_005G07030No description available.scaffold_5-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00015G01880No description available.scaffold00015-View
CS00003G04480No description available.scaffold00003-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0007G19230No description available.scaffold_7+View
EG0002G26460No description available.scaffold_2+View
EG0009G16370No description available.scaffold_9-View
EG0002G04500No description available.scaffold_2-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G05340Expansin-A1 (AtEXPA1), Precursor (putative)scf0513158+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM06G20970No description available.Gm06-View
GM05G00950No description available.Gm05+View
GM09G37090No description available.Gm09+View
GM01G06030No description available.Gm01-View
GM04G33350No description available.Gm04+View
GM02G12140No description available.Gm02-View
GM19G02810No description available.Gm19-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR06G01510No description available.Chr06+View
GR13G08690No description available.Chr13-View
GR05G14220No description available.Chr05-View
GR08G19420No description available.Chr08-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD17G004270No description available.17-View
MD09G003810No description available.9-View
MD13G004560No description available.13+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME11581G01640No description available.scaffold11581-View
ME12794G02260No description available.scaffold12794-View
ME08359G02210No description available.scaffold08359+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G041700expansin A10chr5-View
MT4G081950expansin-A1-like proteinchr4-View
MT6G012500pollen allergen proteinchr6-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G31480Expansin-A31 expansin precursor, putative, expressed3+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_005G20000No description available.scaffold_5-View
PPE_003G24480No description available.scaffold_3+View
PPE_001G28820No description available.scaffold_1-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT08G08830No description available.Chr08-View
PT10G16720No description available.Chr10+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29813G00610No description available.29813-View
RC30138G02270No description available.30138+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL05G007830Expansin 2 (AHRD V1 ***- Q9FUM2_PRUAV)%3B contains Interpro domain(s) IPR002963 Expansinch05+View
SL02G088100Expansin (AHRD V1 ***- Q9ZP31_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminalch02-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST05G010040Expansin (AHRD V1 ***- Q84UK5_PRUPE); contains Interpro domain(s) IPR002963 Expansinchr05-View
ST02G034760Expansin (AHRD V1 ***- Q9ZP31_SOLLC); contains Interpro domain(s) IPR002963 Expansinchr02+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G34240No description available.scaffold_2+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G22030similar to AT1G26770|ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)ch1-1-View
TP2G14080similar to AT2G03090|ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)ch2-4-View
TP5G24650similar to AT1G69530|ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)ch5-6+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G02400name=GSVIVG01011437001;chr14-View
VV01G11950name=GSVIVG01019965001;chr1-View
VV17G03550name=GSVIVG01007987001;chr17-View


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