Anchorpoints

Gene id
AL1G24490
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL2G20190No description available.scaffold_2-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G71380cellulase 3 cellulase 3 (CEL3); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 5 (TAIR:AT1G22880.1); Has 1752 Blast hits to 1741 proteins in 250 species: Archae - 2; Bacteria - 607; Metazoa - 172; Fungi - 17; Plants - 917; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).1-View
AT1G22880cellulase 5 cellulase 5 (CEL5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 3 (TAIR:AT1G71380.1); Has 1763 Blast hits to 1753 proteins in 255 species: Archae - 2; Bacteria - 605; Metazoa - 186; Fungi - 17; Plants - 916; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).1+View
AT1G23210glycosyl hydrolase 9B6 glycosyl hydrolase 9B6 (GH9B6); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B1 (TAIR:AT1G70710.1); Has 1742 Blast hits to 1728 proteins in 256 species: Archae - 2; Bacteria - 580; Metazoa - 187; Fungi - 17; Plants - 918; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).1+View
AT4G09740glycosyl hydrolase 9B14 glycosyl hydrolase 9B14 (GH9B14); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B15 (TAIR:AT4G23560.1); Has 1884 Blast hits to 1872 proteins in 267 species: Archae - 2; Bacteria - 724; Metazoa - 173; Fungi - 19; Plants - 922; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).4-View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00099G00500No description available.scaffold00099-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR02G21040No description available.A02+View
BR07G27750No description available.A07-View
BR07G09220No description available.A07-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL08G00430No description available.Chr8+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00051G02070No description available.CM3.5_scaffold00051-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00021G00970No description available.supercontig_21+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_002G17190No description available.scaffold_2-View
CRU_001G21870No description available.scaffold_1+View
CRU_001G21470No description available.scaffold_1+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G24580No description available.scaffold_6-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR10G14330No description available.Chr10-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_008G00580No description available.scaffold_8-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT19G06930No description available.Chr19-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G20680similar to AT1G23210|AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6)ch1-1+View
TP5G26540similar to AT1G71380|ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3)ch5-6-View


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Chromosome
Strand