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Functional clusters
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BLAST
WorkbenchAnchorpoints
- Gene id
- AL1G23850
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT1G22310 | methyl-CPG-binding domain 8 Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. methyl-CPG-binding domain 8 (MBD8); FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding motif (InterPro:IPR017956), DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 148 Blast hits to 124 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 54; Fungi - 5; Plants - 70; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | 1 | - | View |
Amborella trichopoda
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ATR_00038G01510 | No description available. | scaffold00038 | - | View |
Brassica rapa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BR07G09510 | No description available. | A07 | + | View |
Beta vulgaris
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BV1G10810 | No description available. | Bvchr1.sca002 | + | View |
| BV9G03410 | No description available. | Bvchr9.sca025 | - | View |
Citrullus lanatus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CL08G10880 | No description available. | Chr8 | - | View |
Cucumis melo
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CM00014G03950 | No description available. | CM3.5_scaffold00014 | - | View |
Capsella rubella
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CRU_001G20930 | No description available. | scaffold_1 | - | View |
Citrus sinensis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CS00004G02170 | No description available. | scaffold00004 | - | View |
Eucalyptus grandis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| EG0009G22360 | No description available. | scaffold_9 | + | View |
Fragaria vesca
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| FV5G39530 | Serine-rich adhesin for platelets, Precursor (probable) | LG5 | - | View |
Glycine max
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GM08G19033 | No description available. | Gm08 | + | View |
| GM15G05970 | No description available. | Gm15 | - | View |
| GM04G10976 | No description available. | Gm04 | + | View |
| GM06G10800 | No description available. | Gm06 | + | View |
Gossypium raimondii
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GR02G14070 | No description available. | Chr02 | - | View |
| GR05G22150 | No description available. | Chr05 | - | View |
Lotus japonicus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| LJ6G028050 | No description available. | chr6 | - | View |
Malus domestica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MD01G001880 | No description available. | 1 | + | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ME12455G00220 | No description available. | scaffold12455 | + | View |
Medicago truncatula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MT2G009040 | methyl-CpG-binding domain protein | chr2 | - | View |
| MT3G074640 | methyl-CpG-binding domain protein | chr3 | - | View |
Prunus persica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PPE_001G52240 | No description available. | scaffold_1 | - | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT02G09770 | No description available. | Chr02 | - | View |
| PT05G16410 | No description available. | Chr05 | + | View |
Ricinus communis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| RC29908G01910 | No description available. | 29908 | - | View |
| RC29806G00370 | No description available. | 29806 | + | View |
Solanum lycopersicum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL01G105330 | Methyl binding domain protein (AHRD V1 *-*- B9GUW9_POPTR)%3B contains Interpro domain(s) IPR016177 DNA-binding%2C integrase-type | ch01 | - | View |
| SL04G074250 | Methyl binding domain protein (AHRD V1 *-*- B9H725_POPTR)%3B contains Interpro domain(s) IPR007087 Zinc finger%2C C2H2-type | ch04 | - | View |
Solanum tuberosum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ST04G027990 | Methyl binding domain protein (AHRD V1 *-*- B9H725_POPTR); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type | chr04 | - | View |
| ST01G042400 | Methyl binding domain protein (AHRD V1 *-*- B9GUW9_POPTR); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type | chr01 | - | View |
Theobroma cacao
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TC0002G13040 | No description available. | scaffold_2 | + | View |
| TC0008G10200 | No description available. | scaffold_8 | + | View |
Thellungiella parvula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TP1G19810 | similar to AT1G22310|MBD8 | ch1-1 | - | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV18G03610 | name=GSVIVG01009040001; | chr18 | - | View |