Anchorpoints

Gene id
AL1G23720
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL2G27060No description available.scaffold_2+View
AL7G01980No description available.scaffold_7-View
AL8G31890No description available.scaffold_8+View
AL1G37800No description available.scaffold_1-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G22190Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 4 (TAIR:AT1G78080.1); Has 5992 Blast hits to 5760 proteins in 260 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5935; Viruses - 12; Other Eukaryotes - 35 (source: NCBI BLink). The gene encodes a putative transcription factor belongings to the abiotic stress-associated DREB A-6 clade. Integrase-type DNA-binding superfamily protein1+View
AT5G65130encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G39780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). Integrase-type DNA-binding superfamily protein5+View
AT1G78080Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. Role in mediating light and ethylene signaling. related to AP2 4 (RAP2.4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22190.1); Has 5853 Blast hits to 5721 proteins in 258 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5806; Viruses - 11; Other Eukaryotes - 26 (source: NCBI BLink). related to AP2 41+View
AT2G22200Integrase-type DNA-binding superfamily protein encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G39780.1); Has 5636 Blast hits to 5603 proteins in 247 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 5606; Viruses - 6; Other Eukaryotes - 16 (source: NCBI BLink).2-View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00010G01750No description available.scaffold00010-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR07G19000No description available.A07-View
BR06G23030No description available.A06+View
BR07G32820No description available.A07+View
BR01G00690No description available.A01-View
BR05G21390No description available.A05-View
BR02G24620No description available.A02+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV1G11230No description available.Bvchr1.sca002-View
BV6G13290No description available.Bvchr6.sca004-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL08G10710No description available.Chr8+View
CL11G09520No description available.Chr11+View
CL01G19140No description available.Chr1-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00013G00620No description available.CM3.5_scaffold00013+View
CM00007G07990No description available.CM3.5_scaffold00007-View
CM00014G07350No description available.CM3.5_scaffold00014-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00036G01100No description available.supercontig_36+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_007G01570No description available.scaffold_7-View
CRU_001G20810No description available.scaffold_1+View
CRU_002G18120No description available.scaffold_2+View
CRU_008G25200No description available.scaffold_8+View
CRU_002G23590No description available.scaffold_2+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00004G01870No description available.scaffold00004+View
CS00099G00300No description available.scaffold00099-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G19950No description available.scaffold_6-View
EG0009G03450No description available.scaffold_9-View
EG0006G04350No description available.scaffold_6+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV5G19100Ethylene-responsive transcription factor RAP2-4 (probable)LG5+View
FV0G23270Ethylene-responsive transcription factor RAP2-4 (probable)scf0513168-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM04G11290No description available.Gm04-View
GM14G34590No description available.Gm14+View
GM06G11010No description available.Gm06-View
GM05G31370No description available.Gm05-View
GM18G02170No description available.Gm18-View
GM08G14600No description available.Gm08-View
GM13G01930No description available.Gm13-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR10G04320No description available.Chr10-View
GR07G24070No description available.Chr07-View
GR09G23880No description available.Chr09-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ4G043740No description available.chr4+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD08G018190No description available.8+View
MD01G002600No description available.1-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME12455G00440No description available.scaffold12455-View
ME07027G00090No description available.scaffold07027+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT8G090350ethylene response factorchr8-View
MT5G062700AP2 domain class transcription factorchr5+View
MT3G074130ethylene response factorchr3+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G09170ethylene-responsive transcription factor, putative, expressed3-View
OS08G31580ethylene-responsive transcription factor, putative, expressed8+View
OS02G51670ethylene-responsive transcription factor, putative, expressed2+View
OS09G20350ethylene-responsive transcription factor, putative, expressed9+View
OS06G11860ethylene-responsive transcription factor, putative, expressed6-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_006G18900No description available.scaffold_6+View
PPE_001G51780No description available.scaffold_1+View
PPE_005G14870No description available.scaffold_5-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT05G07730No description available.Chr05-View
PT02G09420No description available.Chr02+View
PT07G09060No description available.Chr07+View
PT05G16870No description available.Chr05+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29908G01550No description available.29908+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL12G056980Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch12+View
SL05G052030Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch05-View
SL04G054910Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch04+View
SL04G072900Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch04+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST04G026930Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr04-View
ST04G027650Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6T615_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr04-View
ST04G020890Ethylene-responsive transcription factor 5 (AHRD V1 *-*- ERF5_NICSY); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr04-View
ST12G025520Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr12+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G10020No description available.scaffold_1-View
TC0008G10620No description available.scaffold_8-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G28210similar to AT5G65130|AP2 domain-containing transcription factor, putativech2-4+View
TP5G33210similar to AT1G78080|RAP2.4 (related to AP2 4)ch5-7+View
TP1G19690similar to AT1G22190|AP2 domain-containing transcription factor, putativech1-1+View
TP1G30610similar to AT1G36060|AP2 domain-containing transcription factor, putativech1-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G03340name=GSVIVG01009007001;chr18+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM01G06490No description available.1-View
ZM04G27660No description available.4-View
ZM09G26940No description available.9+View
ZM07G12460No description available.7+View
ZM05G40750LOC1002805535+View
ZM01G39000LOC5425691+View


Download

Gene id
Species
Description
Chromosome
Strand