Anchorpoints

Gene id
AL1G21250
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL1G12930No description available.scaffold_1+View
AL6G01440No description available.scaffold_6+View
AL7G00100No description available.scaffold_7-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G20190member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin 11 expansin 11 (EXPA11); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.4); Has 2193 Blast hits to 2189 proteins in 161 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 64; Plants - 2080; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).1-View
AT2G20750expansin B1 (EXPB1); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B3 (TAIR:AT4G28250.1); Has 2076 Blast hits to 2069 proteins in 143 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 9; Plants - 2024; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin B12+View
AT4G38210expansin A20 expansin A20 (EXPA20); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, response to karrikin, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A9 (TAIR:AT5G02260.1); Has 2080 Blast hits to 2077 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 2051; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.4-View
AT1G69530expansin A1 Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2216 Blast hits to 2212 proteins in 170 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 48; Plants - 2114; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).1+View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00001G04590No description available.scaffold00001-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR10G28670No description available.A10-View
BR08G25210No description available.A08+View
BR06G14570No description available.A06-View
BR07G10530No description available.A07+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV5G00690No description available.Bvchr5.sca022+View
BV9G04020No description available.Bvchr9.sca025+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL02G03230No description available.Chr2-View
CL01G03100No description available.Chr1-View
CL08G13900No description available.Chr8-View
CL06G16680No description available.Chr6+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00014G07210No description available.CM3.5_scaffold00014-View
CM00040G02390No description available.CM3.5_scaffold00040-View
CM00005G05830No description available.CM3.5_scaffold00005+View
CM00030G01030No description available.CM3.5_scaffold00030-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00119G00150No description available.supercontig_119+View
CP00029G00370No description available.supercontig_29-View
CP00026G02810No description available.supercontig_26+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_007G00100No description available.scaffold_7-View
CRU_006G01070No description available.scaffold_6+View
CRU_002G15220No description available.scaffold_2+View
CRU_007G35320No description available.scaffold_7+View
CRU_001G18900No description available.scaffold_1-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00002G05960No description available.scaffold00002-View
CS00040G00510No description available.scaffold00040-View
CS00111G00290No description available.scaffold00111+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0004G15780No description available.scaffold_4-View
EG0006G13730No description available.scaffold_6-View
EG0007G19230No description available.scaffold_7+View
EG0006G31770No description available.scaffold_6+View
EG0005G04600No description available.scaffold_5+View
EG0011G20260No description available.scaffold_11+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV2G38050Expansin-A11 (AtEXPA11), Precursor (putative)LG2+View
FV2G12560Expansin-A20 (AtEXPA20), Precursor (similar to)LG2+View
FV5G17010Expansin-A25 (AtEXPA25), Precursor (similar to)LG5-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM05G03720No description available.Gm05-View
GM17G37990No description available.Gm17-View
GM06G02420No description available.Gm06+View
GM04G02380No description available.Gm04+View
GM19G37060No description available.Gm19-View
GM06G20970No description available.Gm06-View
GM14G40140No description available.Gm14+View
GM17G10950No description available.Gm17-View
GM04G33350No description available.Gm04+View
GM19G02810No description available.Gm19-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR04G20610No description available.Chr04+View
GR09G19210No description available.Chr09+View
GR06G21080No description available.Chr06-View
GR10G00180No description available.Chr10+View
GR11G20910No description available.Chr11-View
GR09G26920No description available.Chr09+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ2G017270No description available.chr2-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME07035G00560No description available.scaffold07035-View
ME12794G02260No description available.scaffold12794-View
ME02943G00530No description available.scaffold02943-View
ME08359G02210No description available.scaffold08359+View
ME07012G00170No description available.scaffold07012+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G041700expansin A10chr5-View
MT1G026020expansin-A1-like proteinchr1-View
MT4G102450expansin A10chr4+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS06G50400Expansin-A29 expansin precursor, putative, expressed6+View
OS06G50960Expansin-like A4 expansin precursor, putative, expressed6+View
OS06G41700Expansin-A16 expansin precursor, putative, expressed6+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_008G19900No description available.scaffold_8+View
PPE_003G24480No description available.scaffold_3+View
PPE_001G36900No description available.scaffold_1+View
PPE_005G09570No description available.scaffold_5+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G11290No description available.Chr01-View
PT04G20830No description available.Chr04+View
PT05G24410No description available.Chr05-View
PT09G16950No description available.Chr09+View
PT02G01790No description available.Chr02+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30170G05960No description available.30170-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL12G089380Expansin (AHRD V1 ***- Q9FVH0_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminalch12-View
SL03G115890Expansin (AHRD V1 ***- Q9FVG9_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminalch03+View
SL03G093390Expansin protein (AHRD V1 ***- Q14F61_WHEAT)%3B contains Interpro domain(s) IPR007117 Pollen allergen/expansin%2C C-terminalch03-View
SL04G081870Expansin (AHRD V1 ***- Q9FVH0_SOLLC)%3B contains Interpro domain(s) IPR002963 Expansinch04-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST12G027570Expansin (AHRD V1 ***- Q9FVH0_SOLLC); contains Interpro domain(s) IPR002963 Expansinchr12-View
ST02G034760Expansin (AHRD V1 ***- Q9ZP31_SOLLC); contains Interpro domain(s) IPR002963 Expansinchr02+View
ST08G026100Expansin-like protein (AHRD V1 ***- Q0WT83_ARATH); contains Interpro domain(s) IPR002963 Expansinchr08+View
ST03G029370Expansin (AHRD V1 ***- Q9FVG9_SOLLC); contains Interpro domain(s) IPR002963 Expansinchr03+View
ST08G005800Expansin-like protein (AHRD V1 ***- Q0WT83_ARATH); contains Interpro domain(s) IPR005132 Rare lipoprotein Achr08+View
ST04G035260Expansin (AHRD V1 ***- Q9FVH0_SOLLC); contains Interpro domain(s) IPR002963 Expansinchr04-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G14210No description available.scaffold_2+View
TC0005G03690No description available.scaffold_5+View
TC0008G04780No description available.scaffold_8-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G24650similar to AT1G69530|ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)ch5-6+View
TP2G17660similar to AT3G29030|EXPA5 (EXPANSIN A5)ch2-4-View
TP6G40190similar to AT5G02260|ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)ch6-6-View
TP1G17960similar to AT1G20190|ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)ch1-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G01280name=GSVIVG01008762001;chr18+View
VV03G03220name=GSVIVG01023857001;chr3+View


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Gene id
Species
Description
Chromosome
Strand