Anchorpoints
- Gene id
- AL1G21250
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL1G12930 | No description available. | scaffold_1 | + | View |
AL6G01440 | No description available. | scaffold_6 | + | View |
AL7G00100 | No description available. | scaffold_7 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G20190 | member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin 11 expansin 11 (EXPA11); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.4); Has 2193 Blast hits to 2189 proteins in 161 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 64; Plants - 2080; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). | 1 | - | View |
AT2G20750 | expansin B1 (EXPB1); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B3 (TAIR:AT4G28250.1); Has 2076 Blast hits to 2069 proteins in 143 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 9; Plants - 2024; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin B1 | 2 | + | View |
AT4G38210 | expansin A20 expansin A20 (EXPA20); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, response to karrikin, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A9 (TAIR:AT5G02260.1); Has 2080 Blast hits to 2077 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 2051; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. | 4 | - | View |
AT1G69530 | expansin A1 Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2216 Blast hits to 2212 proteins in 170 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 48; Plants - 2114; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). | 1 | + | View |
Amborella trichopoda
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ATR_00001G04590 | No description available. | scaffold00001 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR10G28670 | No description available. | A10 | - | View |
BR08G25210 | No description available. | A08 | + | View |
BR06G14570 | No description available. | A06 | - | View |
BR07G10530 | No description available. | A07 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV5G00690 | No description available. | Bvchr5.sca022 | + | View |
BV9G04020 | No description available. | Bvchr9.sca025 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL02G03230 | No description available. | Chr2 | - | View |
CL01G03100 | No description available. | Chr1 | - | View |
CL08G13900 | No description available. | Chr8 | - | View |
CL06G16680 | No description available. | Chr6 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00014G07210 | No description available. | CM3.5_scaffold00014 | - | View |
CM00040G02390 | No description available. | CM3.5_scaffold00040 | - | View |
CM00005G05830 | No description available. | CM3.5_scaffold00005 | + | View |
CM00030G01030 | No description available. | CM3.5_scaffold00030 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00119G00150 | No description available. | supercontig_119 | + | View |
CP00029G00370 | No description available. | supercontig_29 | - | View |
CP00026G02810 | No description available. | supercontig_26 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_007G00100 | No description available. | scaffold_7 | - | View |
CRU_006G01070 | No description available. | scaffold_6 | + | View |
CRU_002G15220 | No description available. | scaffold_2 | + | View |
CRU_007G35320 | No description available. | scaffold_7 | + | View |
CRU_001G18900 | No description available. | scaffold_1 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00002G05960 | No description available. | scaffold00002 | - | View |
CS00040G00510 | No description available. | scaffold00040 | - | View |
CS00111G00290 | No description available. | scaffold00111 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0004G15780 | No description available. | scaffold_4 | - | View |
EG0006G13730 | No description available. | scaffold_6 | - | View |
EG0007G19230 | No description available. | scaffold_7 | + | View |
EG0006G31770 | No description available. | scaffold_6 | + | View |
EG0005G04600 | No description available. | scaffold_5 | + | View |
EG0011G20260 | No description available. | scaffold_11 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV2G38050 | Expansin-A11 (AtEXPA11), Precursor (putative) | LG2 | + | View |
FV2G12560 | Expansin-A20 (AtEXPA20), Precursor (similar to) | LG2 | + | View |
FV5G17010 | Expansin-A25 (AtEXPA25), Precursor (similar to) | LG5 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM05G03720 | No description available. | Gm05 | - | View |
GM17G37990 | No description available. | Gm17 | - | View |
GM06G02420 | No description available. | Gm06 | + | View |
GM04G02380 | No description available. | Gm04 | + | View |
GM19G37060 | No description available. | Gm19 | - | View |
GM06G20970 | No description available. | Gm06 | - | View |
GM14G40140 | No description available. | Gm14 | + | View |
GM17G10950 | No description available. | Gm17 | - | View |
GM04G33350 | No description available. | Gm04 | + | View |
GM19G02810 | No description available. | Gm19 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR04G20610 | No description available. | Chr04 | + | View |
GR09G19210 | No description available. | Chr09 | + | View |
GR06G21080 | No description available. | Chr06 | - | View |
GR10G00180 | No description available. | Chr10 | + | View |
GR11G20910 | No description available. | Chr11 | - | View |
GR09G26920 | No description available. | Chr09 | + | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ2G017270 | No description available. | chr2 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME07035G00560 | No description available. | scaffold07035 | - | View |
ME12794G02260 | No description available. | scaffold12794 | - | View |
ME02943G00530 | No description available. | scaffold02943 | - | View |
ME08359G02210 | No description available. | scaffold08359 | + | View |
ME07012G00170 | No description available. | scaffold07012 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT5G041700 | expansin A10 | chr5 | - | View |
MT1G026020 | expansin-A1-like protein | chr1 | - | View |
MT4G102450 | expansin A10 | chr4 | + | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS06G50400 | Expansin-A29 expansin precursor, putative, expressed | 6 | + | View |
OS06G50960 | Expansin-like A4 expansin precursor, putative, expressed | 6 | + | View |
OS06G41700 | Expansin-A16 expansin precursor, putative, expressed | 6 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_008G19900 | No description available. | scaffold_8 | + | View |
PPE_003G24480 | No description available. | scaffold_3 | + | View |
PPE_001G36900 | No description available. | scaffold_1 | + | View |
PPE_005G09570 | No description available. | scaffold_5 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT01G11290 | No description available. | Chr01 | - | View |
PT04G20830 | No description available. | Chr04 | + | View |
PT05G24410 | No description available. | Chr05 | - | View |
PT09G16950 | No description available. | Chr09 | + | View |
PT02G01790 | No description available. | Chr02 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30170G05960 | No description available. | 30170 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL12G089380 | Expansin (AHRD V1 ***- Q9FVH0_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminal | ch12 | - | View |
SL03G115890 | Expansin (AHRD V1 ***- Q9FVG9_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminal | ch03 | + | View |
SL03G093390 | Expansin protein (AHRD V1 ***- Q14F61_WHEAT)%3B contains Interpro domain(s) IPR007117 Pollen allergen/expansin%2C C-terminal | ch03 | - | View |
SL04G081870 | Expansin (AHRD V1 ***- Q9FVH0_SOLLC)%3B contains Interpro domain(s) IPR002963 Expansin | ch04 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST12G027570 | Expansin (AHRD V1 ***- Q9FVH0_SOLLC); contains Interpro domain(s) IPR002963 Expansin | chr12 | - | View |
ST02G034760 | Expansin (AHRD V1 ***- Q9ZP31_SOLLC); contains Interpro domain(s) IPR002963 Expansin | chr02 | + | View |
ST08G026100 | Expansin-like protein (AHRD V1 ***- Q0WT83_ARATH); contains Interpro domain(s) IPR002963 Expansin | chr08 | + | View |
ST03G029370 | Expansin (AHRD V1 ***- Q9FVG9_SOLLC); contains Interpro domain(s) IPR002963 Expansin | chr03 | + | View |
ST08G005800 | Expansin-like protein (AHRD V1 ***- Q0WT83_ARATH); contains Interpro domain(s) IPR005132 Rare lipoprotein A | chr08 | + | View |
ST04G035260 | Expansin (AHRD V1 ***- Q9FVH0_SOLLC); contains Interpro domain(s) IPR002963 Expansin | chr04 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0002G14210 | No description available. | scaffold_2 | + | View |
TC0005G03690 | No description available. | scaffold_5 | + | View |
TC0008G04780 | No description available. | scaffold_8 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP5G24650 | similar to AT1G69530|ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) | ch5-6 | + | View |
TP2G17660 | similar to AT3G29030|EXPA5 (EXPANSIN A5) | ch2-4 | - | View |
TP6G40190 | similar to AT5G02260|ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9) | ch6-6 | - | View |
TP1G17960 | similar to AT1G20190|ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) | ch1-1 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV18G01280 | name=GSVIVG01008762001; | chr18 | + | View |
VV03G03220 | name=GSVIVG01023857001; | chr3 | + | View |