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Functional clusters
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WorkbenchAnchorpoints
- Gene id
- AL1G13820
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT1G13195 | RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G24440.1); Has 912 Blast hits to 912 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 381; Fungi - 25; Plants - 358; Viruses - 17; Other Eukaryotes - 131 (source: NCBI BLink). | 1 | - | View |
Brassica rapa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BR06G07980 | No description available. | A06 | + | View |
| BR09G49130 | No description available. | A09 | + | View |
Beta vulgaris
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BV6G20010 | No description available. | Bvchr6.sca026 | - | View |
Citrullus lanatus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CL08G17020 | No description available. | Chr8 | - | View |
| CL05G27110 | No description available. | Chr5 | - | View |
Cucumis melo
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CM00016G02190 | No description available. | CM3.5_scaffold00016 | - | View |
Carica papaya
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CP00004G00650 | No description available. | supercontig_4 | - | View |
Capsella rubella
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CRU_001G12320 | No description available. | scaffold_1 | - | View |
Fragaria vesca
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| FV5G09630 | E3 ubiquitin-protein ligase RNF8 (probable) | LG5 | - | View |
Glycine max
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GM11G37510 | No description available. | Gm11 | + | View |
| GM18G01440 | No description available. | Gm18 | - | View |
Gossypium raimondii
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GR12G17400 | No description available. | Chr12 | + | View |
| GR08G16280 | No description available. | Chr08 | - | View |
Malus domestica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MD14G015940 | No description available. | 14 | + | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ME12794G00110 | No description available. | scaffold12794 | + | View |
| ME10899G00230 | No description available. | scaffold10899 | - | View |
| ME04175G00680 | No description available. | scaffold04175 | - | View |
Medicago truncatula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MT3G086130 | ubiquitin-protein ligase | chr3 | + | View |
Oryza sativa ssp. japonica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| OS01G67850 | zinc finger, RING-type, putative, expressed | 1 | + | View |
Prunus persica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PPE_005G16440 | No description available. | scaffold_5 | + | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT10G05270 | No description available. | Chr10 | - | View |
Ricinus communis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| RC29929G02560 | No description available. | 29929 | - | View |
Solanum lycopersicum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL05G014230 | Zinc finger family protein (AHRD V1 **-- D7KQC9_ARALY)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-type | ch05 | - | View |
| SL03G111510 | Zinc finger family protein (AHRD V1 **-- D7KQC9_ARALY)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-type | ch03 | + | View |
Solanum tuberosum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ST03G023610 | Zinc finger family protein (AHRD V1 **-- D7KQC9_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type | chr03 | - | View |
Theobroma cacao
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TC0003G12530 | No description available. | scaffold_3 | - | View |
Thellungiella parvula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TP1G11720 | similar to AT1G13195|zinc finger (C3HC4-type RING finger) family protein | ch1-1 | - | View |
Zea mays
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ZM03G23740 | No description available. | 3 | - | View |