Anchorpoints

Gene id
AL1G13520
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G12890encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. Integrase-type DNA-binding superfamily protein Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G18560.1); Has 5243 Blast hits to 5226 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5234; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).1+View
AT1G68550encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT3G25890.2); Has 4835 Blast hits to 4832 proteins in 228 species: Archae - 0; Bacteria - 2; Metazoa - 14; Fungi - 3; Plants - 4809; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). Integrase-type DNA-binding superfamily protein1-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G49350No description available.A09-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00033G00300No description available.supercontig_33+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G12050No description available.scaffold_1+View
CRU_002G14170No description available.scaffold_2-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00003G01890No description available.scaffold00003-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0004G19360No description available.scaffold_4+View
EG0009G13040No description available.scaffold_9-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV5G10220Ethylene-responsive transcription factor ESR2 (Protein DRN-LIKE) (probable)LG5+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM16G05070No description available.Gm16-View
GM02G07310No description available.Gm02+View
GM19G27790No description available.Gm19+View
GM16G26320No description available.Gm16+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR05G17790No description available.Chr05-View
GR08G16100No description available.Chr08+View
GR02G18750No description available.Chr02+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD16G005800No description available.16-View
MD04G005620No description available.4-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME04175G00280No description available.scaffold04175+View
ME06137G00160No description available.scaffold06137-View
ME05432G00300No description available.scaffold05432+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT7G084370AP2 domain class transcription factorchr7-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS04G32620ethylene-responsive transcription factor ERF114, putative, expressed4+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G22070No description available.scaffold_1-View
PPE_002G17670No description available.scaffold_2+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT03G16100No description available.Chr03-View
PT14G09450No description available.Chr14+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30131G00910No description available.30131-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL08G081960Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF4_NICSY)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch08+View
SL05G013540Ethylene-responsive transcription factor ERF086 (AHRD V1 *-*- D7LXW6_ARALY)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch05+View
SL12G005960Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6THY5_MAIZE)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch12-View
SL01G095500Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6T615_MAIZE)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch01+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST01G032950Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr01+View
ST05G014440Ethylene-responsive transcription factor ERF086 (AHRD V1 *-*- D7LXW6_ARALY); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr05+View
ST11G017530Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6SU49_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr11-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G26110No description available.scaffold_2+View
TC0004G04770No description available.scaffold_4+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G11460similar to AT1G12890|AP2 domain-containing transcription factor, putativech1-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G13470name=GSVIVG01032961001;chr14-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM02G16760AP2 domain containing protein2-View


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Gene id
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Description
Chromosome
Strand