Anchorpoints

Gene id
AL1G10530
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL2G05900No description available.scaffold_2-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G60190Encodes PUB19, a plant U-box armadillo repeat protein. Involved in salt inhibition of germination together with PUB18. ARM repeat superfamily protein ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding, zinc ion binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 18 (TAIR:AT1G10560.1); Has 2852 Blast hits to 2737 proteins in 198 species: Archae - 2; Bacteria - 22; Metazoa - 274; Fungi - 109; Plants - 2200; Viruses - 3; Other Eukaryotes - 242 (source: NCBI BLink).1+View
AT1G10560Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. plant U-box 18 (PUB18); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G60190.1); Has 3089 Blast hits to 2773 proteins in 228 species: Archae - 0; Bacteria - 22; Metazoa - 252; Fungi - 338; Plants - 2172; Viruses - 3; Other Eukaryotes - 302 (source: NCBI BLink). plant U-box 181+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G06910No description available.A06+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV6G09970No description available.Bvchr6.sca027-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G26150No description available.Chr5+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00016G03200No description available.CM3.5_scaffold00016-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00069G00140No description available.supercontig_69+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_002G04780No description available.scaffold_2-View
CRU_001G09560No description available.scaffold_1+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00003G02720No description available.scaffold00003-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0008G21140No description available.scaffold_8-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV4G21880U-box domain-containing protein 19 (probable)LG4-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM02G03890No description available.Gm02+View
GM06G19540No description available.Gm06-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR05G18320No description available.Chr05-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD13G006450No description available.13+View
MD16G005080No description available.16+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME12794G01200No description available.scaffold12794-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G034440armadillo/beta-catenin repeat proteinchr5-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G26610No description available.scaffold_1-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29631G00040No description available.29631+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL05G005670U-box domain-containing protein (AHRD V1 *--- D7LSY5_ARALY)%3B contains Interpro domain(s) IPR011989 Armadillo-like helicalch05-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST05G013370U-box domain-containing protein 18 (AHRD V1 **-- PUB18_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helicalchr05-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G04480similar to AT1G60190|armadillo/beta-catenin repeat family protein / U-box domain-containing proteinch2-2-View
TP1G09210similar to AT1G10560|PUB18 (PLANT U-BOX 18)ch1-1+View


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Gene id
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Description
Chromosome
Strand