Anchorpoints

Gene id
AL1G03690
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL8G06680No description available.scaffold_8+View
AL4G16110No description available.scaffold_4-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G04370Ethylene-responsive element binding factor 14 encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. Ethylene-responsive element binding factor 14 (ERF14); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G43410.1); Has 6105 Blast hits to 5744 proteins in 253 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6091; Viruses - 2; Other Eukaryotes - 12 (source: NCBI BLink).1+View
AT5G43410encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. Integrase-type DNA-binding superfamily protein Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Ethylene-responsive element binding factor 14 (TAIR:AT1G04370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5-View
AT3G23220encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT3G23230.1); Has 5797 Blast hits to 5590 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5785; Viruses - 2; Other Eukaryotes - 10 (source: NCBI BLink). Integrase-type DNA-binding superfamily protein3+View
AT2G31230encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. ethylene-responsive element binding factor 15 ethylene-responsive element binding factor 15 (ERF15); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent, response to chitin; LOCATED IN: chloroplast; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: octadecanoid-responsive Arabidopsis AP2/ERF 59 (TAIR:AT1G06160.1); Has 7638 Blast hits to 6656 proteins in 461 species: Archae - 0; Bacteria - 190; Metazoa - 867; Fungi - 122; Plants - 5748; Viruses - 12; Other Eukaryotes - 699 (source: NCBI BLink).2-View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00002G04840No description available.scaffold00002-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR10G03400No description available.A10-View
BR04G18500No description available.A04-View
BR05G10660No description available.A05+View
BR07G05350No description available.A07+View
BR09G20180No description available.A09+View
BR09G53540No description available.A09-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV3G09630No description available.Bvchr3.sca001-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL09G07260No description available.Chr9+View
CL06G06710No description available.Chr6+View
CL05G04690No description available.Chr5-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00026G00550No description available.CM3.5_scaffold00026-View
CM00018G01190No description available.CM3.5_scaffold00018-View
CM00006G05310No description available.CM3.5_scaffold00006-View
CM00057G00140No description available.CM3.5_scaffold00057+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00044G00660No description available.supercontig_44-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G03260No description available.scaffold_1+View
CRU_003G22480No description available.scaffold_3+View
CRU_008G05090No description available.scaffold_8+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00022G00010No description available.scaffold00022-View
CS00088G00430No description available.scaffold00088-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0008G25010No description available.scaffold_8-View
EG0011G27530No description available.scaffold_11-View
EG0008G01580No description available.scaffold_8+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV4G00120Ethylene-responsive transcription factor 14 (AtERF14) (similar to)LG4+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM10G33060No description available.Gm10-View
GM10G04160No description available.Gm10+View
GM10G00980No description available.Gm10-View
GM13G18330No description available.Gm13+View
GM19G34650No description available.Gm19+View
GM20G34550No description available.Gm20+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR05G04920No description available.Chr05+View
GR01G25240No description available.Chr01+View
GR11G17280No description available.Chr11+View
GR06G24980No description available.Chr06+View
GR04G22080No description available.Chr04+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ1G061510No description available.chr1-View
LJ6G000390No description available.chr6-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD13G022970No description available.13+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME09880G00210No description available.scaffold09880+View
ME03802G00350No description available.scaffold03802-View
ME10563G01120No description available.scaffold10563+View
ME01551G01060No description available.scaffold01551-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT1G043350ethylene-responsive transcription factor 1Bchr1-View
MT1G074230AP2 domain class transcription factorchr1+View
MT1G069940ethylene-responsive transcription factor 1Bchr1-View
MT1G079630AP2 domain class transcription factorchr1-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G03690No description available.scaffold_1+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT10G07230No description available.Chr10-View
PT08G16600No description available.Chr08+View
PT12G03290No description available.Chr12-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29603G00010No description available.29603+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL09G089910Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch09+View
SL03G005500Ethylene-responsive transcription factor 14 (AHRD V1 **** ERF97_ARATH)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch03+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST09G026020Ethylene-responsive transcription factor 1A (AHRD V1 *-** A9P6A4_MEDTR); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr09-View
ST03G005730Ethylene responsive transcription factor 2a (AHRD V1 *-** C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr03+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0004G25590No description available.scaffold_4+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G08290similar to AT5G43410|ethylene-responsive factor, putativech2-4-View
TP3G20870similar to AT3G23220|DNA binding / transcription factorch3-1+View
TP1G03180similar to AT1G04370|ATERF14 (Ethylene-responsive element binding factor 14)ch1-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV07G10790name=GSVIVG01028312001;chr7+View
VV05G07910name=GSVIVG01027770001;chr5+View


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Gene id
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Description
Chromosome
Strand