Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
TC0008G17320
(Theobroma cacao)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Theobroma cacao | Orthologous gene family | TC0008G17320 | 1 |  |
| Best-Hits-and-Inparalogs(BHI)family | TC0008G17320 | 1 | ||
| Tree-based ortholog | TC0008G17320 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | 1-to-1 | ATR_00007G02810 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00007G02810 | 1 | ||
| Tree-based ortholog | 1-to-1 | ATR_00007G02810 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | 1-to-1 | AL1G24420 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL1G24420 | 1 | ||
| Tree-based ortholog | 1-to-1 | AL1G24420 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | 1-to-1 | AT1G22800 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G22800 | 1 | ||
| Tree-based ortholog | 1-to-1 | AT1G22800 | 1 | ||
| Beta vulgaris | Orthologous gene family | 1-to-1 | BV1G12580 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV1G12580 | 1 | ||
| Tree-based ortholog | 1-to-1 | BV1G12580 | 1 | ||
| Brassica rapa | Orthologous gene family | 1-to-1 | BR09G31580 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR09G31580 | 1 | ||
| Tree-based ortholog | 1-to-many | BR07G09270 BR09G31580 | 2 | ||
| Capsella rubella | Orthologous gene family | 1-to-1 | CRU_001G21400 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_001G21400 | 1 | ||
| Tree-based ortholog | 1-to-1 | CRU_001G21400 | 1 | ||
| Carica papaya | Orthologous gene family | 1-to-1 | CP00438G00040 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00438G00040 | 1 | ||
| Tree-based ortholog | 1-to-1 | CP00438G00040 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | 1-to-1 | CR13G05200 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR13G05200 | 1 | ||
| Tree-based ortholog | 1-to-1 | CR13G05200 | 1 | ||
| Citrullus lanatus | Orthologous gene family | 1-to-1 | CL08G00260 | 1 | |
| Anchor point | N/A | CL08G00260 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL08G00260 | 1 | ||
| Tree-based ortholog | 1-to-1 | CL08G00260 | 1 | ||
| Citrus sinensis | Orthologous gene family | 1-to-1 | CS00530G00050 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00530G00050 | 1 | ||
| Tree-based ortholog | 1-to-many | CS00530G00050 CS00530G00090 CS00530G00080 | 3 | ||
| Cucumis melo | Orthologous gene family | 1-to-1 | CM00051G02450 | 1 | |
| Anchor point | N/A | CM00051G02450 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00051G02450 | 1 | ||
| Tree-based ortholog | 1-to-1 | CM00051G02450 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-1 | EG0006G34850 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0006G34850 | 1 | ||
| Tree-based ortholog | 1-to-1 | EG0006G34850 | 1 | ||
| Fragaria vesca | Orthologous gene family | 1-to-1 | FV5G24850 | 1 | |
| Anchor point | N/A | FV5G24850 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G24850 | 1 | ||
| Tree-based ortholog | 1-to-1 | FV5G24850 | 1 | ||
| Glycine max | Orthologous gene family | 1-to-many | GM04G43650 GM12G37130 | 2 | |
| Anchor point | N/A | GM04G43530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM04G43650 GM12G37130 | 2 | ||
| Tree-based ortholog | 1-to-many | GM19G45340 GM04G43530 GM04G43650 ... | 4 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-1 | GR13G13490 | 1 | |
| Anchor point | N/A | GR13G13490 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR13G13490 | 1 | ||
| Tree-based ortholog | 1-to-1 | GR13G13490 | 1 | ||
| Lotus japonicus | Orthologous gene family | 1-to-1 | LJ3G028650 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ3G028650 | 1 | ||
| Tree-based ortholog | 1-to-1 | LJ3G028650 | 1 | ||
| Malus domestica | Orthologous gene family | 1-to-many | MD00G485050 MD15G031810 | 2 | |
| Anchor point | N/A | MD08G020320 MD15G031810 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD15G031810 | 1 | ||
| Tree-based ortholog | 1-to-many | MD00G380660 MD00G485050 MD00G287680 ... | 6 | ||
| Manihot esculenta | Orthologous gene family | 1-to-1 | ME11746G00130 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME11746G00130 | 1 | ||
| Tree-based ortholog | 1-to-1 | ME11746G00130 | 1 | ||
| Medicago truncatula | Orthologous gene family | 1-to-1 | MT3G005730 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT3G005730 | 1 | ||
| Tree-based ortholog | 1-to-1 | MT3G005730 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | 1-to-1 | OS12G10200 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS12G10200 | 1 | ||
| Tree-based ortholog | 1-to-1 | OS12G10200 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | 1-to-1 | OL20G02150 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL20G02150 | 1 | ||
| Tree-based ortholog | 1-to-1 | OL20G02150 | 1 | ||
| Physcomitrella patens | Orthologous gene family | 1-to-1 | PP00198G00320 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00198G00320 | 1 | ||
| Tree-based ortholog | 1-to-1 | PP00198G00320 | 1 | ||
| Populus trichocarpa | Orthologous gene family | 1-to-many | PT13G10170 PT13G10190 | 2 | |
| Anchor point | N/A | PT13G10170 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT13G10170 | 1 | ||
| Tree-based ortholog | 1-to-many | PT13G10170 PT13G10190 | 2 | ||
| Prunus persica | Orthologous gene family | 1-to-1 | PPE_001G58510 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_001G58510 | 1 | ||
| Tree-based ortholog | 1-to-1 | PPE_001G58510 | 1 | ||
| Ricinus communis | Orthologous gene family | 1-to-1 | RC29938G00290 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29938G00290 | 1 | ||
| Tree-based ortholog | 1-to-many | RC33010G00010 RC29938G00290 | 2 | ||
| Solanum lycopersicum | Orthologous gene family | 1-to-1 | SL10G012160 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL10G012160 | 1 | ||
| Tree-based ortholog | 1-to-1 | SL10G012160 | 1 | ||
| Solanum tuberosum | Orthologous gene family | 1-to-1 | ST10G010310 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST10G010310 | 1 | ||
| Tree-based ortholog | 1-to-1 | ST10G010310 | 1 | ||
| Vitis vinifera | Orthologous gene family | 1-to-1 | VV00G23630 | 1 | |
| Anchor point | N/A | VV00G23630 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV00G23630 | 1 | ||
| Tree-based ortholog | 1-to-1 | VV00G23630 | 1 | ||
| Zea mays | Orthologous gene family | 1-to-1 | ZM10G05620 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM10G05620 | 1 | ||
| Tree-based ortholog | 1-to-1 | ZM10G05620 | 1 |