Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
TC0007G06830
(Theobroma cacao)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Theobroma cacao | Orthologous gene family | TC0007G06830 | 1 |  |
| Anchor point | TC0002G16850 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | TC0007G06830 | 1 | ||
| Tree-based ortholog | TC0007G06830 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Anchor point | 1-to-1 | ATR_00003G03560 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00003G03560 | 1 | ||
| Tree-based ortholog | 1-to-1 | ATR_00003G03560 | 1 | ||
| Arabidopsis lyrata | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL7G13650 | 1 | |
| Tree-based ortholog | 1-to-many | AL3G41810 AL7G13650 | 2 | ||
| Arabidopsis thaliana | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT2G20825 | 1 | |
| Tree-based ortholog | 1-to-many | AT2G20825 AT4G28190 | 2 | ||
| Brassica rapa | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR01G18420 | 1 | |
| Tree-based ortholog | 1-to-many | BR07G00060 BR01G18420 BR03G50170 | 3 | ||
| Capsella rubella | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_007G11840 | 1 | |
| Tree-based ortholog | 1-to-many | CRU_003G34050 CRU_007G11840 | 2 | ||
| Carica papaya | Anchor point | 1-to-many | CP00034G01070 CP00080G01050 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00034G01070 | 1 | ||
| Tree-based ortholog | 1-to-many | CP00080G01050 CP00000G01530 CP00080G01060 | 3 | ||
| Citrullus lanatus | Anchor point | 1-to-1 | CL11G12390 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL02G00820 | 1 | ||
| Tree-based ortholog | 1-to-1 | CL11G12390 | 1 | ||
| Citrus sinensis | Orthologous gene family | 1-to-1 | CS00012G00470 | 1 | |
| Anchor point | 1-to-1 | CS00012G00470 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00012G00470 | 1 | ||
| Tree-based ortholog | 1-to-1 | CS00012G00470 | 1 | ||
| Cucumis melo | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00034G03890 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00034G03890 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-1 | EG0006G28450 | 1 | |
| Anchor point | 1-to-1 | EG0006G28450 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0011G07870 | 1 | ||
| Tree-based ortholog | 1-to-1 | EG0006G28450 | 1 | ||
| Fragaria vesca | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV6G40460 | 1 | |
| Tree-based ortholog | 1-to-1 | FV6G40460 | 1 | ||
| Glycine max | Anchor point | 1-to-1 | GM06G38610 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM06G45180 GM12G11800 | 2 | ||
| Tree-based ortholog | 1-to-many | GM00G01670 GM06G38970 GM06G39000 ... | 9 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-1 | GR09G43130 | 1 | |
| Anchor point | 1-to-1 | GR09G43130 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR09G43130 | 1 | ||
| Tree-based ortholog | 1-to-1 | GR09G43130 | 1 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ3G039140 | 1 | |
| Tree-based ortholog | 1-to-1 | LJ3G039140 | 1 | ||
| Malus domestica | Anchor point | 1-to-1 | MD03G019160 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD05G011700 MD17G007060 MD00G119900 | 3 | ||
| Tree-based ortholog | 1-to-1 | MD03G019160 | 1 | ||
| Manihot esculenta | Orthologous gene family | 1-to-1 | ME03741G01330 | 1 | |
| Anchor point | 1-to-many | ME03741G01330 ME11689G00180 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME03741G01330 | 1 | ||
| Tree-based ortholog | 1-to-1 | ME03741G01330 | 1 | ||
| Medicago truncatula | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT00G18250 | 1 | |
| Tree-based ortholog | 1-to-many | MT00G18250 MT2G090080 | 2 | ||
| Oryza sativa ssp. japonica | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS01G57240 | 1 | |
| Tree-based ortholog | 1-to-many | OS01G57240 OS05G42290 | 2 | ||
| Populus trichocarpa | Anchor point | 1-to-many | PT13G14540 PT11G12750 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT13G14540 PT19G10450 | 2 | ||
| Tree-based ortholog | 1-to-many | PT13G14540 PT19G10450 | 2 | ||
| Prunus persica | Anchor point | 1-to-1 | PPE_004G18070 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_003G21240 | 1 | ||
| Tree-based ortholog | 1-to-1 | PPE_004G18070 | 1 | ||
| Ricinus communis | Orthologous gene family | 1-to-1 | RC29080G00070 | 1 | |
| Anchor point | 1-to-many | RC29983G01500 RC29080G00070 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29080G00070 | 1 | ||
| Tree-based ortholog | 1-to-1 | RC29080G00070 | 1 | ||
| Solanum lycopersicum | Anchor point | 1-to-1 | SL12G010760 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL07G054450 | 1 | ||
| Tree-based ortholog | 1-to-many | SL12G010760 SL12G010370 SL07G054450 | 3 | ||
| Solanum tuberosum | Anchor point | 1-to-many | ST12G007000 ST07G026850 ST07G020040 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST07G020040 | 1 | ||
| Tree-based ortholog | 1-to-many | ST12G007000 ST07G020040 | 2 | ||
| Thellungiella parvula | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP7G26140 | 1 | |
| Tree-based ortholog | 1-to-many | TP3G34060 TP7G26140 | 2 | ||
| Vitis vinifera | Anchor point | 1-to-1 | VV12G11950 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV12G11950 | 1 | ||
| Tree-based ortholog | 1-to-1 | VV12G11950 | 1 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM03G30180 | 1 | |
| Tree-based ortholog | 1-to-many | ZM03G30180 ZM08G33830 | 2 |