Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
TC0005G28580
(Theobroma cacao)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Theobroma cacao | Orthologous gene family | TC0005G28580 | 1 |  |
| Anchor point | TC0004G24010 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | TC0005G28580 | 1 | ||
| Tree-based ortholog | TC0005G28580 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Anchor point | 1-to-1 | ATR_00002G06140 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00002G06140 | 1 | ||
| Tree-based ortholog | 1-to-1 | ATR_00002G06140 | 1 | ||
| Arabidopsis lyrata | Anchor point | 1-to-1 | AL7G29330 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL7G29330 | 1 | ||
| Tree-based ortholog | 1-to-1 | AL7G29330 | 1 | ||
| Arabidopsis thaliana | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT4G14750 | 1 | |
| Tree-based ortholog | 1-to-1 | AT4G14750 | 1 | ||
| Beta vulgaris | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G53890 | 1 | |
| Tree-based ortholog | 1-to-1 | BV0G53890 | 1 | ||
| Brassica rapa | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR08G07150 | 1 | |
| Tree-based ortholog | 1-to-many | BR08G07150 BR01G21080 | 2 | ||
| Capsella rubella | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_007G26220 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_007G26220 | 1 | ||
| Carica papaya | Orthologous gene family | 1-to-1 | CP00117G00750 | 1 | |
| Anchor point | 1-to-many | CP00117G00750 CP00044G01100 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00117G00750 | 1 | ||
| Tree-based ortholog | 1-to-1 | CP00117G00750 | 1 | ||
| Citrullus lanatus | Orthologous gene family | 1-to-1 | CL02G16760 | 1 | |
| Anchor point | 1-to-many | CL05G05400 CL06G06180 CL02G16760 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL02G16760 | 1 | ||
| Tree-based ortholog | 1-to-1 | CL02G16760 | 1 | ||
| Citrus sinensis | Orthologous gene family | 1-to-1 | CS01147G00040 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS01147G00040 | 1 | ||
| Tree-based ortholog | 1-to-1 | CS00011G00220 | 1 | ||
| Cucumis melo | Orthologous gene family | 1-to-1 | CM00003G04920 | 1 | |
| Anchor point | 1-to-many | CM00022G00960 CM00003G04920 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00003G04920 | 1 | ||
| Tree-based ortholog | 1-to-1 | CM00003G04920 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-1 | EG0008G35450 | 1 | |
| Anchor point | 1-to-1 | EG0008G35450 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0008G35450 | 1 | ||
| Tree-based ortholog | 1-to-1 | EG0008G35450 | 1 | ||
| Fragaria vesca | Orthologous gene family | 1-to-1 | FV0G25150 | 1 | |
| Anchor point | 1-to-1 | FV0G25150 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV0G25150 | 1 | ||
| Tree-based ortholog | 1-to-1 | FV0G25150 | 1 | ||
| Glycine max | Orthologous gene family | 1-to-many | GM03G40630 GM19G43300 | 2 | |
| Anchor point | 1-to-many | GM02G00710 GM03G40630 GM19G43300 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM19G43300 GM03G40630 | 2 | ||
| Tree-based ortholog | 1-to-many | GM19G43300 GM03G40630 | 2 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-1 | GR13G20140 | 1 | |
| Anchor point | 1-to-many | GR13G20140 GR06G24180 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR13G20140 | 1 | ||
| Tree-based ortholog | 1-to-1 | GR13G20140 | 1 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ5G034640 | 1 | |
| Tree-based ortholog | 1-to-1 | LJ5G034640 | 1 | ||
| Malus domestica | Orthologous gene family | 1-to-many | MD00G102920 MD00G107840 MD00G289130 ... | 5 | |
| Anchor point | 1-to-1 | MD04G018080 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD00G102920 MD00G307900 MD04G018080 ... | 5 | ||
| Tree-based ortholog | 1-to-many | MD00G102920 MD04G018080 MD00G289130 | 3 | ||
| Manihot esculenta | Orthologous gene family | 1-to-1 | ME03802G00860 | 1 | |
| Anchor point | 1-to-many | ME01551G01800 ME10563G00280 ME03802G00860 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME03802G00860 | 1 | ||
| Tree-based ortholog | 1-to-1 | ME03802G00860 | 1 | ||
| Medicago truncatula | Orthologous gene family | 1-to-1 | MT7G114870 | 1 | |
| Anchor point | 1-to-1 | MT6G033415 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT1G103070 | 1 | ||
| Tree-based ortholog | 1-to-1 | MT7G114870 | 1 | ||
| Oryza sativa ssp. japonica | Anchor point | 1-to-1 | OS12G41160 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS10G28420 | 1 | ||
| Tree-based ortholog | 1-to-many | OS03G43580 OS12G41160 OS03G06570 ... | 4 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00272G00120 PP00001G02000 PP00060G00500 ... | 7 | |
| Tree-based ortholog | 1-to-many | PP00372G00060 PP00287G00200 PP00060G00500 | 3 | ||
| Populus trichocarpa | Orthologous gene family | 1-to-many | PT05G05150 PT13G03890 | 2 | |
| Anchor point | 1-to-many | PT05G05150 PT10G08260 PT08G15670 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT05G05150 PT13G03890 | 2 | ||
| Tree-based ortholog | 1-to-1 | PT05G05150 | 1 | ||
| Prunus persica | Anchor point | 1-to-1 | PPE_001G01950 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_001G01950 | 1 | ||
| Tree-based ortholog | 1-to-1 | PPE_001G01950 | 1 | ||
| Ricinus communis | Orthologous gene family | 1-to-1 | RC30128G00170 | 1 | |
| Anchor point | 1-to-many | RC29844G00760 RC30128G00170 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30128G00170 | 1 | ||
| Tree-based ortholog | 1-to-1 | RC30128G00170 | 1 | ||
| Solanum lycopersicum | Anchor point | 1-to-1 | SL09G082560 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL09G082560 | 1 | ||
| Tree-based ortholog | 1-to-1 | SL09G082560 | 1 | ||
| Solanum tuberosum | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST09G024580 | 1 | |
| Tree-based ortholog | 1-to-1 | ST09G024580 | 1 | ||
| Thellungiella parvula | Anchor point | 1-to-1 | TP7G12880 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP7G12880 | 1 | ||
| Tree-based ortholog | 1-to-1 | TP7G12880 | 1 | ||
| Vitis vinifera | Orthologous gene family | 1-to-1 | VV14G03390 | 1 | |
| Anchor point | 1-to-1 | VV05G05350 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV14G03390 | 1 | ||
| Tree-based ortholog | 1-to-1 | VV14G03390 | 1 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM01G44190 | 1 | |
| Tree-based ortholog | 1-to-many | ZM01G46890 ZM03G16140 ZM09G28800 ... | 4 |