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Integrative Orthology Viewer:
TC0005G25080
(Theobroma cacao)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Theobroma cacao | Orthologous gene family | TC0004G27770 TC0005G25050 TC0005G25080 | 3 |  |
| Best-Hits-and-Inparalogs(BHI)family | TC0005G25080 | 1 | ||
| Tree-based ortholog | TC0005G25080 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ATR_00057G01210 ATR_00057G01220 ATR_00057G01230 | 3 | |
| Tree-based ortholog | 1-to-many | ATR_00057G01220 ATR_00057G01230 | 2 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL3G06450 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL3G06450 | 1 | ||
| Tree-based ortholog | 1-to-1 | AL3G06450 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT3G06350 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT3G06350 | 1 | ||
| Tree-based ortholog | 1-to-1 | AT3G06350 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-many | BV0G73300 BV0G73310 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G73300 | 1 | ||
| Tree-based ortholog | 1-to-many | BV0G73300 BV0G73310 | 2 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR01G40310 BR02G34270 BR03G30410 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR03G30410 | 1 | ||
| Tree-based ortholog | 1-to-many | BR02G34270 BR01G40310 BR03G30410 | 3 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_003G05550 CRU_003G05560 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_003G05560 | 1 | ||
| Tree-based ortholog | 1-to-many | CRU_003G05560 CRU_003G05550 | 2 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00016G00990 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00016G00990 | 1 | ||
| Tree-based ortholog | 1-to-1 | CP00016G00990 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR08G05930 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR08G05930 | 1 | ||
| Tree-based ortholog | 1-to-1 | CR08G05930 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-many | CL01G08150 CL02G01150 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL01G08150 | 1 | ||
| Tree-based ortholog | 1-to-1 | CL02G01150 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00011G02410 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00011G02410 | 1 | ||
| Tree-based ortholog | 1-to-1 | CS00011G02410 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-many | CM00007G04770 CM00045G02580 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00007G04770 | 1 | ||
| Tree-based ortholog | 1-to-1 | CM00045G02580 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0008G35880 EG0008G35890 EG0010G02300 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0008G35880 | 1 | ||
| Tree-based ortholog | 1-to-1 | EG0008G35880 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-many | FV1G19500 FV1G19520 FV6G07230 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV6G07240 | 1 | ||
| Tree-based ortholog | 1-to-1 | FV6G07240 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM00G01180 GM01G20760 GM20G37400 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GM01G20760 | 1 | ||
| Tree-based ortholog | 1-to-many | GM10G29970 GM20G37400 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR04G25040 GR06G07510 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR06G07510 | 1 | ||
| Tree-based ortholog | 1-to-1 | GR04G25040 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ4G008220 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ4G008220 | 1 | ||
| Tree-based ortholog | 1-to-1 | LJ4G008220 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G196450 MD00G199470 MD00G208810 ... | 8 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD01G014110 | 1 | ||
| Tree-based ortholog | 1-to-many | MD00G196450 MD00G208810 MD00G208840 ... | 4 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME03614G04140 ME03614G04150 ME05214G00320 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME03614G04140 | 1 | ||
| Tree-based ortholog | 1-to-1 | ME03614G04140 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT4G090620 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT4G090620 | 1 | ||
| Tree-based ortholog | 1-to-1 | MT4G090620 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS01G27750 OS01G27770 OS12G34874 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS12G34874 | 1 | ||
| Tree-based ortholog | 1-to-many | OS01G27770 OS01G27750 OS12G34874 | 3 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL12G02660 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL12G02660 | 1 | ||
| Tree-based ortholog | 1-to-1 | OL12G02660 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-1 | PP00047G00100 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00047G00100 | 1 | ||
| Tree-based ortholog | 1-to-1 | PP00047G00100 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT05G04340 PT08G19610 PT10G01900 ... | 6 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT10G02060 PT10G01900 | 2 | ||
| Tree-based ortholog | 1-to-1 | PT05G04330 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_006G17060 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_006G17060 | 1 | ||
| Tree-based ortholog | 1-to-1 | PPE_006G33800 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-many | RC29726G00880 RC30128G00870 RC30128G00880 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30128G00870 | 1 | ||
| Tree-based ortholog | 1-to-1 | RC30128G00870 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL01G067750 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL01G067750 | 1 | ||
| Tree-based ortholog | 1-to-1 | SL01G067750 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST01G021770 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST01G021770 | 1 | ||
| Tree-based ortholog | 1-to-many | ST07G014140 ST01G021770 | 2 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP3G05260 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP3G05260 | 1 | ||
| Tree-based ortholog | 1-to-1 | TP3G05260 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | VV05G03610 VV14G04450 VV14G04460 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV14G04450 | 1 | ||
| Tree-based ortholog | 1-to-1 | VV14G04450 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM03G12530 ZM03G17940 ZM10G05140 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM10G05140 | 1 | ||
| Tree-based ortholog | 1-to-many | ZM03G12530 ZM10G05140 ZM03G17940 | 3 |