Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
TC0002G32500
(Theobroma cacao)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Theobroma cacao | Orthologous gene family | TC0002G32500 | 1 |  |
| Best-Hits-and-Inparalogs(BHI)family | TC0002G32500 | 1 | ||
| Tree-based ortholog | TC0002G32500 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Anchor point | N/A | ATR_00047G00950 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00047G00950 | 1 | ||
| Tree-based ortholog | 1-to-1 | ATR_00022G00730 | 1 | ||
| Arabidopsis lyrata | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL6G15620 | 1 | |
| Tree-based ortholog | 1-to-many | AL7G39560 AL3G01400 AL6G15620 | 3 | ||
| Arabidopsis thaliana | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT5G15790 | 1 | |
| Tree-based ortholog | 1-to-many | AT5G38895 AT3G02290 AT5G15790 | 3 | ||
| Beta vulgaris | Anchor point | N/A | BV2G08450 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV2G08450 | 1 | ||
| Tree-based ortholog | 1-to-1 | BV2G08450 | 1 | ||
| Brassica rapa | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR05G35690 | 1 | |
| Tree-based ortholog | 1-to-many | BR04G08550 BR05G35690 BR10G19410 ... | 4 | ||
| Capsella rubella | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_007G35630 | 1 | |
| Tree-based ortholog | 1-to-many | CRU_007G35630 CRU_003G01320 CRU_006G13610 | 3 | ||
| Carica papaya | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00214G00080 | 1 | |
| Tree-based ortholog | 1-to-many | CP00011G00320 CP00214G00080 | 2 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR08G03650 | 1 | |
| Tree-based ortholog | 1-to-1 | CR08G03650 | 1 | ||
| Citrullus lanatus | Anchor point | N/A | CL11G13940 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL11G13940 | 1 | ||
| Tree-based ortholog | 1-to-1 | CL11G13940 | 1 | ||
| Citrus sinensis | Anchor point | N/A | CS00019G01750 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00015G00410 | 1 | ||
| Tree-based ortholog | 1-to-1 | CS00019G01750 | 1 | ||
| Cucumis melo | Anchor point | N/A | CM00051G00940 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00051G00940 | 1 | ||
| Tree-based ortholog | 1-to-1 | CM00051G00940 | 1 | ||
| Eucalyptus grandis | Anchor point | N/A | EG0009G17340 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0009G17340 | 1 | ||
| Tree-based ortholog | 1-to-many | EG0002G29690 EG0002G31330 EG0019G00040 ... | 4 | ||
| Fragaria vesca | Anchor point | N/A | FV6G42010 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G03180 | 1 | ||
| Tree-based ortholog | 1-to-many | FV0G14230 FV6G42010 | 2 | ||
| Glycine max | Anchor point | N/A | GM19G04340 GM18G50945 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM19G04340 GM13G06840 | 2 | ||
| Tree-based ortholog | 1-to-many | GM08G27730 GM18G50945 GM13G06840 ... | 4 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-1 | GR13G09620 | 1 | |
| Anchor point | N/A | GR13G09620 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR13G09620 | 1 | ||
| Tree-based ortholog | 1-to-1 | GR13G09620 | 1 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ2G017980 | 1 | |
| Tree-based ortholog | 1-to-many | LJ1G039320 LJ2G017980 | 2 | ||
| Malus domestica | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD04G005690 | 1 | |
| Tree-based ortholog | 1-to-1 | MD00G336890 | 1 | ||
| Manihot esculenta | Anchor point | N/A | ME04043G01700 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME04043G01700 | 1 | ||
| Tree-based ortholog | 1-to-many | ME12086G00020 ME04043G01700 | 2 | ||
| Medicago truncatula | Anchor point | N/A | MT7G016840 MT5G046970 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT6G015980 | 1 | ||
| Tree-based ortholog | 1-to-many | MT7G016840 MT6G015980 | 2 | ||
| Oryza sativa ssp. japonica | Anchor point | N/A | OS03G40170 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS01G70160 | 1 | ||
| Tree-based ortholog | 1-to-many | OS01G70160 OS11G41140 | 2 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL20G02540 | 1 | |
| Tree-based ortholog | 1-to-1 | OL20G02540 | 1 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00455G00030 PP00016G01170 | 2 | |
| Tree-based ortholog | 1-to-many | PP00455G00030 PP00016G01170 | 2 | ||
| Populus trichocarpa | Anchor point | N/A | PT17G10010 PT10G14030 PT04G11480 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT17G10010 | 1 | ||
| Tree-based ortholog | 1-to-1 | PT10G14030 | 1 | ||
| Prunus persica | Anchor point | N/A | PPE_003G22810 PPE_001G30230 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_003G22810 | 1 | ||
| Tree-based ortholog | 1-to-1 | PPE_001G30230 | 1 | ||
| Ricinus communis | Anchor point | N/A | RC30174G04730 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29790G00150 | 1 | ||
| Tree-based ortholog | 1-to-1 | RC30174G04730 | 1 | ||
| Solanum lycopersicum | Anchor point | N/A | SL02G089240 SL05G012010 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL02G089240 | 1 | ||
| Tree-based ortholog | 1-to-many | SL02G089240 SL02G065720 SL05G012010 | 3 | ||
| Solanum tuberosum | Anchor point | N/A | ST02G033640 ST05G006020 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST02G033640 | 1 | ||
| Tree-based ortholog | 1-to-many | ST02G033640 ST02G012580 ST05G006020 | 3 | ||
| Thellungiella parvula | Anchor point | N/A | TP5G24180 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP7G03010 | 1 | ||
| Tree-based ortholog | 1-to-many | TP7G03010 TP3G01350 TP6G28330 | 3 | ||
| Vitis vinifera | Anchor point | N/A | VV14G16070 VV01G10770 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV14G16070 | 1 | ||
| Tree-based ortholog | 1-to-many | VV01G01340 VV14G16070 | 2 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM04G01820 | 1 | |
| Tree-based ortholog | 1-to-many | ZM03G22340 ZM05G26010 ZM04G01820 | 3 |