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Integrative Orthology Viewer:
TC0002G12640
(Theobroma cacao)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Theobroma cacao | Orthologous gene family | TC0001G08830 TC0002G12640 | 2 |  |
| Anchor point | TC0008G06680 TC0001G08830 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | TC0002G12640 | 1 | ||
| Tree-based ortholog | TC0002G12640 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00135G00090 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00135G00090 | 1 | ||
| Tree-based ortholog | 1-to-1 | ATR_00135G00090 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL4G01980 AL7G17570 | 2 | |
| Anchor point | many-to-many | AL4G01980 AL6G09130 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL7G17570 | 1 | ||
| Tree-based ortholog | 1-to-1 | AL4G01980 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT2G22500 AT4G24570 | 2 | |
| Anchor point | many-to-many | AT5G09470 AT2G22500 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT4G24570 | 1 | ||
| Tree-based ortholog | 1-to-1 | AT2G22500 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV6G05500 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV6G05500 | 1 | ||
| Tree-based ortholog | 1-to-1 | BV6G05500 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR01G14590 BR04G12610 BR09G09610 | 3 | |
| Anchor point | many-to-1 | BR09G09610 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR09G09610 | 1 | ||
| Tree-based ortholog | 1-to-many | BR09G09610 BR04G12610 | 2 | ||
| Capsella rubella | Orthologous gene family | many-to-1 | CRU_004G01570 | 1 | |
| Anchor point | many-to-many | CRU_004G01570 CRU_006G07830 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_004G01570 | 1 | ||
| Tree-based ortholog | 1-to-1 | CRU_004G01570 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-many | CP00021G00020 CP00055G00410 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00021G00020 | 1 | ||
| Tree-based ortholog | 1-to-1 | CP00055G00410 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR16G10900 | 1 | |
| Tree-based ortholog | 1-to-many | CR15G01600 CR06G02100 CR06G08720 ... | 7 | ||
| Citrullus lanatus | Orthologous gene family | many-to-many | CL01G18710 CL08G11540 CL08G11550 | 3 | |
| Anchor point | many-to-1 | CL01G18710 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL01G18710 | 1 | ||
| Tree-based ortholog | 1-to-1 | CL01G18710 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-many | CS00004G02840 CS10588G00010 | 2 | |
| Anchor point | many-to-1 | CS00004G02840 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS10588G00010 | 1 | ||
| Tree-based ortholog | 1-to-many | CS10588G00010 CS00004G02840 | 2 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00007G07520 | 1 | |
| Anchor point | many-to-1 | CM00007G07520 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00007G07520 | 1 | ||
| Tree-based ortholog | 1-to-1 | CM00007G07520 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0009G04430 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0009G04430 | 1 | ||
| Tree-based ortholog | 1-to-1 | EG0009G04430 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV1G26390 | 1 | |
| Anchor point | many-to-1 | FV1G26390 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G20950 | 1 | ||
| Tree-based ortholog | 1-to-1 | FV5G20950 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM01G02950 GM02G04620 GM08G38370 | 3 | |
| Anchor point | many-to-many | GM02G37460 GM14G35730 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM02G04620 GM01G02950 | 2 | ||
| Tree-based ortholog | 1-to-many | GM01G02950 GM02G04620 GM08G38370 | 3 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR03G04300 GR05G22450 GR07G23340 | 3 | |
| Anchor point | many-to-1 | GR05G22450 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR05G22450 | 1 | ||
| Tree-based ortholog | 1-to-1 | GR05G22450 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ2G025390 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ2G025390 | 1 | ||
| Tree-based ortholog | 1-to-1 | LJ2G025390 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G108920 MD12G001010 | 2 | |
| Anchor point | many-to-1 | MD15G030190 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD12G001010 MD00G108920 | 2 | ||
| Tree-based ortholog | 1-to-many | MD08G018480 MD15G030190 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME02855G00060 ME03283G00040 ME03735G00310 ... | 6 | |
| Anchor point | many-to-many | ME03735G00310 ME06916G01920 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME03735G00320 ME03735G00310 | 2 | ||
| Tree-based ortholog | 1-to-many | ME03735G00320 ME03735G00310 ME03735G00330 | 3 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT5G032420 MT8G068890 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT5G032420 | 1 | ||
| Tree-based ortholog | 1-to-many | MT5G032420 MT8G068890 | 2 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS08G37370 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS08G37370 | 1 | ||
| Tree-based ortholog | 1-to-many | OS09G29050 OS08G37370 | 2 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL02G01320 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL02G01320 | 1 | ||
| Tree-based ortholog | 1-to-1 | OL02G01320 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00022G00720 PP00232G00050 PP00232G00070 ... | 5 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00232G00050 PP00347G00220 PP00447G00040 ... | 5 | ||
| Tree-based ortholog | 1-to-many | PP00232G00050 PP00232G00070 PP00447G00040 ... | 5 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT00G11430 PT07G11300 PT17G04510 ... | 5 | |
| Anchor point | many-to-many | PT07G11300 PT02G10440 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT17G04780 PT17G04510 PT07G11300 | 3 | ||
| Tree-based ortholog | 1-to-many | PT00G11430 PT17G04510 PT17G04780 ... | 6 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_006G20400 PPE_008G07870 | 2 | |
| Anchor point | many-to-many | PPE_006G20400 PPE_008G07870 PPE_001G58620 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_006G20400 | 1 | ||
| Tree-based ortholog | 1-to-1 | PPE_008G07870 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-many | RC27749G00110 RC29838G00250 RC29908G02830 | 3 | |
| Anchor point | many-to-many | RC29838G00250 RC29908G02830 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29838G00250 | 1 | ||
| Tree-based ortholog | 1-to-many | RC29838G00260 RC29838G00250 | 2 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL05G051400 SL11G010500 | 2 | |
| Anchor point | many-to-1 | SL11G010500 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL11G010500 | 1 | ||
| Tree-based ortholog | 1-to-many | SL05G051400 SL11G010500 | 2 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST05G023800 ST11G009190 | 2 | |
| Anchor point | many-to-1 | ST11G009190 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST11G009190 | 1 | ||
| Tree-based ortholog | 1-to-many | ST05G023800 ST11G009190 | 2 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP4G01520 | 1 | |
| Anchor point | many-to-many | TP6G33860 TP4G01520 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP4G01520 | 1 | ||
| Tree-based ortholog | 1-to-1 | TP4G01520 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV18G04410 | 1 | |
| Anchor point | many-to-1 | VV18G04410 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV18G04410 | 1 | ||
| Tree-based ortholog | 1-to-1 | VV18G04410 | 1 | ||
| Zea mays | Orthologous gene family | many-to-1 | ZM01G35470 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM01G35470 | 1 | ||
| Tree-based ortholog | 1-to-1 | ZM01G35470 | 1 |