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Integrative Orthology Viewer:
TC0002G11540
(Theobroma cacao)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Theobroma cacao | Orthologous gene family | TC0002G11540 | 1 |  |
| Best-Hits-and-Inparalogs(BHI)family | TC0002G11540 | 1 | ||
| Tree-based ortholog | TC0008G07680 TC0002G11540 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Anchor point | N/A | ATR_00033G00510 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00010G03790 | 1 | ||
| Tree-based ortholog | many-to-1 | ATR_00033G00510 | 1 | ||
| Arabidopsis lyrata | Anchor point | N/A | AL1G44410 AL3G21290 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | AL1G44410 AL8G05560 | 2 | ||
| Tree-based ortholog | many-to-1 | AL3G21290 | 1 | ||
| Arabidopsis thaliana | Anchor point | N/A | AT1G50010 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | AT1G50010 AT1G04820 | 2 | ||
| Tree-based ortholog | many-to-many | AT1G50010 AT1G04820 AT4G14960 | 3 | ||
| Beta vulgaris | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV6G15010 | 1 | |
| Tree-based ortholog | many-to-1 | BV6G15010 | 1 | ||
| Brassica rapa | Anchor point | N/A | BR06G03240 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR08G03140 | 1 | ||
| Tree-based ortholog | many-to-many | BR08G03140 BR06G03240 BR00G01550 | 3 | ||
| Capsella rubella | Anchor point | N/A | CRU_001G37260 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CRU_151G00030 CRU_001G37260 | 2 | ||
| Tree-based ortholog | many-to-many | CRU_151G00030 CRU_001G37260 | 2 | ||
| Carica papaya | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00129G00410 | 1 | |
| Tree-based ortholog | many-to-1 | CP00129G00410 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CR04G00210 CR03G10780 | 2 | |
| Tree-based ortholog | many-to-many | CR03G10780 CR04G00210 | 2 | ||
| Citrullus lanatus | Anchor point | N/A | CL02G07210 CL10G08260 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL01G18250 | 1 | ||
| Tree-based ortholog | many-to-many | CL10G08260 CL05G25530 CL01G18250 | 3 | ||
| Citrus sinensis | Anchor point | N/A | CS00236G00160 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00236G00160 | 1 | ||
| Tree-based ortholog | many-to-many | CS00004G03600 CS00236G00160 | 2 | ||
| Cucumis melo | Anchor point | N/A | CM00031G05100 CM00034G01480 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00034G01480 | 1 | ||
| Tree-based ortholog | many-to-many | CM00031G05100 CM00007G07010 | 2 | ||
| Eucalyptus grandis | Anchor point | N/A | EG0007G08660 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0007G08660 | 1 | ||
| Tree-based ortholog | many-to-1 | EG0007G08660 | 1 | ||
| Fragaria vesca | Anchor point | N/A | FV2G02770 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV2G02770 | 1 | ||
| Tree-based ortholog | many-to-1 | FV5G24250 | 1 | ||
| Glycine max | Anchor point | N/A | GM10G40150 GM20G27280 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM10G40150 GM20G27280 | 2 | ||
| Tree-based ortholog | many-to-many | GM20G27280 GM10G40150 | 2 | ||
| Gossypium raimondii | Anchor point | N/A | GR12G14700 GR05G22960 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR05G22960 | 1 | ||
| Tree-based ortholog | many-to-1 | GR05G22960 | 1 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ4G041450 | 1 | |
| Tree-based ortholog | many-to-1 | LJ1G064570 | 1 | ||
| Malus domestica | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD05G021060 | 1 | |
| Tree-based ortholog | many-to-1 | MD05G021060 | 1 | ||
| Manihot esculenta | Anchor point | N/A | ME07708G00040 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME07708G00040 ME08463G00010 ME08463G00020 | 3 | ||
| Tree-based ortholog | many-to-many | ME07708G00040 ME08463G00010 ME08463G00020 | 3 | ||
| Medicago truncatula | Anchor point | N/A | MT1G106005 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT1G106005 | 1 | ||
| Tree-based ortholog | many-to-1 | MT1G106005 | 1 | ||
| Oryza sativa ssp. japonica | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS03G51600 | 1 | |
| Tree-based ortholog | many-to-many | OS03G51600 OS11G14220 | 2 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | OL12G01340 OL08G03660 | 2 | |
| Tree-based ortholog | many-to-many | OL08G03660 OL12G01340 | 2 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00070G00900 | 1 | |
| Tree-based ortholog | many-to-1 | PP00094G00300 | 1 | ||
| Populus trichocarpa | Anchor point | N/A | PT09G08510 PT01G28950 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT09G08510 | 1 | ||
| Tree-based ortholog | many-to-1 | PT09G08510 | 1 | ||
| Prunus persica | Anchor point | N/A | PPE_008G16880 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_008G16880 | 1 | ||
| Tree-based ortholog | many-to-many | PPE_006G22200 PPE_008G16880 | 2 | ||
| Ricinus communis | Anchor point | N/A | RC30099G00690 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30099G00690 | 1 | ||
| Tree-based ortholog | many-to-many | RC30099G00690 RC30170G00180 | 2 | ||
| Solanum lycopersicum | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL02G087880 | 1 | |
| Tree-based ortholog | many-to-many | SL02G091870 SL04G077020 SL08G006890 ... | 5 | ||
| Solanum tuberosum | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST04G029950 | 1 | |
| Tree-based ortholog | many-to-many | ST02G030350 ST02G010740 ST04G029950 ... | 6 | ||
| Thellungiella parvula | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP4G01790 | 1 | |
| Tree-based ortholog | many-to-1 | TP4G01790 | 1 | ||
| Vitis vinifera | Anchor point | N/A | VV03G09220 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV08G08540 | 1 | ||
| Tree-based ortholog | many-to-1 | VV18G05240 | 1 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM05G04960 | 1 | |
| Tree-based ortholog | many-to-many | ZM05G04960 ZM01G51400 ZM05G03360 ... | 8 |