Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
ST02G032620
(Solanum tuberosum)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Solanum tuberosum | Orthologous gene family | ST01G049390 ST02G011890 ST02G023840 ... | 8 |  |
| Anchor point | ST02G011890 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | ST02G032620 | 1 | ||
| Tree-based ortholog | ST02G032620 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-many | ATR_00037G01150 ATR_00106G00620 ATR_00159G00110 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00169G00310 | 1 | ||
| Tree-based ortholog | 1-to-1 | ATR_00169G00310 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL1G23120 AL2G09830 AL2G25050 ... | 4 | |
| Anchor point | 1-to-1 | AL4G03390 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL4G03390 | 1 | ||
| Tree-based ortholog | 1-to-many | AL7G03760 AL4G03390 | 2 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT1G21850 AT1G21860 AT1G41830 ... | 5 | |
| Anchor point | 1-to-many | AT5G66920 AT2G23630 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT5G66920 | 1 | ||
| Tree-based ortholog | 1-to-1 | AT5G66920 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-many | BV0G29220 BV0G29230 BV5G07550 ... | 6 | |
| Anchor point | 1-to-1 | BV6G09270 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV6G09270 | 1 | ||
| Tree-based ortholog | 1-to-1 | BV6G09270 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR02G23420 BR07G31370 BR08G05810 | 3 | |
| Anchor point | 1-to-many | BR04G13380 BR07G11530 BR01G01810 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR09G08340 | 1 | ||
| Tree-based ortholog | 1-to-many | BR09G08340 BR09G33140 BR07G11530 | 3 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_002G21750 CRU_007G18410 | 2 | |
| Anchor point | 1-to-many | CRU_008G26740 CRU_004G02770 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_008G26740 | 1 | ||
| Tree-based ortholog | 1-to-1 | CRU_008G26740 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-many | CP00006G03920 CP00008G00620 CP00026G02350 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00006G03920 | 1 | ||
| Tree-based ortholog | 1-to-1 | CP00006G03920 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-many | CL01G16890 CL02G00130 CL02G03820 ... | 10 | |
| Anchor point | 1-to-1 | CL01G16890 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL01G16890 | 1 | ||
| Tree-based ortholog | 1-to-1 | CL01G16890 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-many | CS00002G06250 CS00006G02510 CS00006G02520 ... | 6 | |
| Anchor point | 1-to-1 | CS00006G02510 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00006G02510 | 1 | ||
| Tree-based ortholog | 1-to-1 | CS00006G02510 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-many | CM00001G00010 CM00001G05500 CM00007G05640 ... | 8 | |
| Anchor point | 1-to-1 | CM00007G05640 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00007G05640 | 1 | ||
| Tree-based ortholog | 1-to-1 | CM00007G05640 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0001G09000 EG0002G29860 EG0004G10800 ... | 9 | |
| Anchor point | 1-to-many | EG0009G07630 EG0008G16480 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0009G07630 | 1 | ||
| Tree-based ortholog | 1-to-many | EG0009G07630 EG0008G16480 | 2 | ||
| Fragaria vesca | Orthologous gene family | many-to-many | FV1G16730 FV2G11170 FV2G37670 ... | 5 | |
| Anchor point | 1-to-1 | FV5G36940 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G36940 | 1 | ||
| Tree-based ortholog | 1-to-1 | FV5G36940 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM01G38980 GM04G02140 GM06G02240 ... | 16 | |
| Anchor point | 1-to-many | GM17G21490 GM11G06290 GM01G38980 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM11G06290 GM01G38980 | 2 | ||
| Tree-based ortholog | 1-to-many | GM05G17432 GM17G21490 GM11G06290 ... | 4 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR02G12000 GR02G20230 GR06G26900 ... | 12 | |
| Anchor point | 1-to-many | GR08G07300 GR07G20970 GR11G10440 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR07G05290 | 1 | ||
| Tree-based ortholog | 1-to-many | GR11G10440 GR07G20990 GR07G05290 | 3 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ6G022180 | 1 | |
| Tree-based ortholog | 1-to-many | LJ4G014040 LJ6G002320 LJ6G001860 ... | 4 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G010880 MD00G215760 MD00G215780 ... | 9 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD15G020580 MD00G501020 | 2 | ||
| Tree-based ortholog | 1-to-many | MD15G020580 MD00G501020 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME03235G00340 ME03303G00110 ME05214G00110 ... | 6 | |
| Anchor point | 1-to-1 | ME03235G00340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME03235G00340 | 1 | ||
| Tree-based ortholog | 1-to-many | ME03235G00340 ME10441G00010 | 2 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT1G026410 MT2G088080 MT3G115050 ... | 11 | |
| Anchor point | 1-to-many | MT8G479380 MT5G018270 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT8G479390 | 1 | ||
| Tree-based ortholog | 1-to-many | MT8G479390 MT5G018270 | 2 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS06G46500 OS07G32660 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS07G02810 | 1 | ||
| Tree-based ortholog | 1-to-1 | OS07G02810 | 1 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00217G00360 | 1 | |
| Tree-based ortholog | 1-to-1 | PP00217G00360 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT02G01370 PT02G22760 PT04G01010 ... | 8 | |
| Anchor point | 1-to-1 | PT07G03820 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT07G03830 | 1 | ||
| Tree-based ortholog | 1-to-1 | PT07G03830 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_001G36570 PPE_003G19600 PPE_004G01720 ... | 6 | |
| Anchor point | 1-to-1 | PPE_007G16210 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_007G16210 | 1 | ||
| Tree-based ortholog | 1-to-1 | PPE_007G16210 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-many | RC28842G00080 RC29676G00350 RC29676G00370 ... | 7 | |
| Anchor point | 1-to-1 | RC29676G00350 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29676G00350 | 1 | ||
| Tree-based ortholog | 1-to-1 | RC29676G00350 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL01G111970 SL02G065170 SL02G080670 ... | 8 | |
| Anchor point | 1-to-many | SL02G065170 SL02G090360 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL02G090360 | 1 | ||
| Tree-based ortholog | 1-to-1 | SL02G090360 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP5G31290 TP7G20200 | 2 | |
| Anchor point | 1-to-1 | TP2G29740 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP2G29740 | 1 | ||
| Tree-based ortholog | 1-to-1 | TP2G29740 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0001G04740 TC0001G04750 TC0002G04950 ... | 7 | |
| Anchor point | 1-to-1 | TC0001G04740 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0001G04750 | 1 | ||
| Tree-based ortholog | 1-to-1 | TC0001G04750 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | VV00G11620 VV00G11630 VV03G03650 ... | 6 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV00G11620 | 1 | ||
| Tree-based ortholog | 1-to-1 | VV00G11620 | 1 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM01G48720 ZM07G00900 | 2 | |
| Tree-based ortholog | 1-to-many | ZM07G00900 ZM01G48720 | 2 |