Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
SL02G082260
(Solanum lycopersicum)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Solanum lycopersicum | Orthologous gene family | SL02G038740 SL02G082260 SL03G032010 ... | 4 |  |
| Anchor point | SL03G032010 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | SL02G082260 | 1 | ||
| Tree-based ortholog | SL02G082260 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00022G01230 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00022G01230 | 1 | ||
| Arabidopsis lyrata | Anchor point | 1-to-many | AL3G38110 AL2G25440 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL2G25440 | 1 | ||
| Tree-based ortholog | 1-to-1 | AL2G25440 | 1 | ||
| Arabidopsis thaliana | Anchor point | 1-to-1 | AT1G76490 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G76490 | 1 | ||
| Tree-based ortholog | 1-to-1 | AT1G76490 | 1 | ||
| Beta vulgaris | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV9G04050 | 1 | |
| Tree-based ortholog | 1-to-1 | BV9G04050 | 1 | ||
| Brassica rapa | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR02G23800 | 1 | |
| Tree-based ortholog | 1-to-many | BR02G23800 BR07G31780 | 2 | ||
| Capsella rubella | Anchor point | 1-to-1 | CRU_002G22090 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_002G22090 | 1 | ||
| Tree-based ortholog | 1-to-1 | CRU_002G22090 | 1 | ||
| Carica papaya | Anchor point | 1-to-1 | CP00006G03380 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00026G00070 | 1 | ||
| Tree-based ortholog | 1-to-1 | CP00006G03380 | 1 | ||
| Citrullus lanatus | Anchor point | 1-to-1 | CL08G08980 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL02G03190 | 1 | ||
| Tree-based ortholog | 1-to-1 | CL08G08980 | 1 | ||
| Citrus sinensis | Anchor point | 1-to-1 | CS00002G07180 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS04194G00010 | 1 | ||
| Tree-based ortholog | 1-to-1 | CS00002G07180 | 1 | ||
| Cucumis melo | Anchor point | 1-to-1 | CM00096G00160 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00020G00270 | 1 | ||
| Tree-based ortholog | 1-to-1 | CM00096G00160 | 1 | ||
| Eucalyptus grandis | Anchor point | 1-to-many | EG0006G30700 EG0010G22200 EG0009G18510 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0009G12730 | 1 | ||
| Tree-based ortholog | 1-to-1 | EG0010G22200 | 1 | ||
| Fragaria vesca | Anchor point | 1-to-1 | FV1G11740 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | FV2G12640 FV2G12610 FV2G12620 ... | 4 | ||
| Tree-based ortholog | 1-to-1 | FV1G11740 | 1 | ||
| Glycine max | Anchor point | 1-to-many | GM09G32850 GM11G09330 GM01G36080 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM02G44070 GM14G05020 | 2 | ||
| Tree-based ortholog | 1-to-many | GM11G09330 GM01G36080 GM09G32850 ... | 4 | ||
| Gossypium raimondii | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GR05G21570 GR13G06520 | 2 | |
| Tree-based ortholog | 1-to-1 | GR02G14600 | 1 | ||
| Malus domestica | Anchor point | 1-to-1 | MD02G009000 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD00G479200 MD00G273850 | 2 | ||
| Tree-based ortholog | 1-to-many | MD02G009000 MD00G342170 MD15G022240 ... | 8 | ||
| Manihot esculenta | Anchor point | 1-to-many | ME07520G03670 ME06512G02230 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME04300G00010 ME06582G00700 | 2 | ||
| Tree-based ortholog | 1-to-many | ME06512G02230 ME07520G03670 | 2 | ||
| Medicago truncatula | Anchor point | 1-to-many | MT5G024880 MT8G072640 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT8G072640 | 1 | ||
| Tree-based ortholog | 1-to-many | MT5G026450 MT5G026480 MT5G026460 ... | 8 | ||
| Oryza sativa ssp. japonica | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS08G40180 | 1 | |
| Tree-based ortholog | 1-to-many | OS02G48330 OS08G40180 OS09G31970 | 3 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00139G00010 PP00001G00550 PP00061G00070 | 3 | |
| Tree-based ortholog | 1-to-many | PP00139G00010 PP00001G00550 PP00061G00070 | 3 | ||
| Populus trichocarpa | Anchor point | 1-to-many | PT05G25700 PT01G45700 PT02G00400 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT11G14500 PT01G45700 | 2 | ||
| Tree-based ortholog | 1-to-many | PT01G45700 PT11G14500 | 2 | ||
| Prunus persica | Anchor point | 1-to-many | PPE_008G19930 PPE_007G20760 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_008G19930 | 1 | ||
| Tree-based ortholog | 1-to-many | PPE_007G20760 PPE_007G20790 | 2 | ||
| Ricinus communis | Anchor point | 1-to-1 | RC30170G07400 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30170G07400 | 1 | ||
| Tree-based ortholog | 1-to-1 | RC29682G00040 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST06G028600 ST09G026980 | 2 | |
| Anchor point | 1-to-many | ST03G008670 ST02G025630 ST04G036300 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST02G025630 | 1 | ||
| Tree-based ortholog | 1-to-many | ST12G017190 ST11G029570 ST09G017740 ... | 7 | ||
| Thellungiella parvula | Anchor point | 1-to-1 | TP5G31650 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP5G31650 | 1 | ||
| Tree-based ortholog | 1-to-1 | TP5G31650 | 1 | ||
| Theobroma cacao | Anchor point | 1-to-1 | TC0001G00200 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0002G14250 | 1 | ||
| Tree-based ortholog | 1-to-1 | TC0001G00200 | 1 | ||
| Vitis vinifera | Anchor point | 1-to-1 | VV18G12850 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV04G04710 | 1 | ||
| Tree-based ortholog | 1-to-1 | VV04G04710 | 1 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM07G18100 ZM02G32860 | 2 | |
| Tree-based ortholog | 1-to-1 | ZM07G09000 | 1 |