Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PT09G07190
(Populus trichocarpa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Populus trichocarpa | Orthologous gene family | PT01G27710 PT03G19780 PT09G07190 | 3 |  |
| Anchor point | PT03G19780 PT01G27710 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | PT09G07190 PT01G27710 | 2 | ||
| Tree-based ortholog | PT01G27710 PT09G07190 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00063G00150 | 1 | |
| Anchor point | many-to-1 | ATR_00063G00150 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00063G00150 | 1 | ||
| Tree-based ortholog | many-to-1 | ATR_00063G00150 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL3G08360 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL3G08360 | 1 | ||
| Tree-based ortholog | many-to-1 | AL3G08360 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT3G07910 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT3G07910 | 1 | ||
| Tree-based ortholog | many-to-1 | AT3G07910 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV2G16680 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV2G16680 | 1 | ||
| Tree-based ortholog | many-to-1 | BV2G16680 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR03G31220 BR05G33490 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BR05G33490 | 1 | ||
| Tree-based ortholog | many-to-1 | BR05G33490 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-1 | CRU_003G07160 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_003G07160 | 1 | ||
| Tree-based ortholog | many-to-1 | CRU_003G07160 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00003G03600 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00003G03600 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00003G03600 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR01G02470 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR01G02470 | 1 | ||
| Tree-based ortholog | many-to-1 | CR01G02470 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00408G00130 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00408G00130 | 1 | ||
| Tree-based ortholog | many-to-1 | CS00408G00130 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00022G03950 | 1 | |
| Anchor point | many-to-1 | CM00022G03950 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00022G03950 | 1 | ||
| Tree-based ortholog | many-to-1 | CM00022G03950 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0010G10470 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | EG0010G10470 | 1 | ||
| Tree-based ortholog | many-to-1 | EG0010G10470 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV2G48070 | 1 | |
| Anchor point | many-to-1 | FV2G48070 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV2G48070 | 1 | ||
| Tree-based ortholog | many-to-1 | FV2G48070 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM08G41416 GM18G14801 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GM08G41416 GM18G14801 | 2 | ||
| Tree-based ortholog | many-to-many | GM18G14801 GM08G41416 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-1 | GR11G21400 | 1 | |
| Anchor point | many-to-1 | GR11G21400 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GR11G21400 | 1 | ||
| Tree-based ortholog | many-to-many | GR11G21400 GR13G00500 | 2 | ||
| Malus domestica | Orthologous gene family | many-to-1 | MD11G014930 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MD11G014930 | 1 | ||
| Tree-based ortholog | many-to-1 | MD11G014930 | 1 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME08473G00210 | 1 | |
| Anchor point | many-to-1 | ME08473G00210 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ME08473G00210 | 1 | ||
| Tree-based ortholog | many-to-1 | ME08473G00210 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT3G434780 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT3G434780 | 1 | ||
| Tree-based ortholog | many-to-1 | MT3G434780 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL04G03850 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL04G03850 | 1 | ||
| Tree-based ortholog | many-to-1 | OL04G03850 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00029G00710 PP00291G00050 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00029G00710 PP00291G00050 | 2 | ||
| Tree-based ortholog | many-to-many | PP00029G00710 PP00291G00050 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_004G29640 | 1 | |
| Anchor point | many-to-1 | PPE_004G29640 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_004G29640 | 1 | ||
| Tree-based ortholog | many-to-1 | PPE_004G29640 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL12G099710 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL12G099710 | 1 | ||
| Tree-based ortholog | many-to-1 | SL12G099710 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST12G031680 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST12G031680 | 1 | ||
| Tree-based ortholog | many-to-many | ST08G023950 ST08G024020 ST11G020480 | 3 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP3G06830 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP3G06830 | 1 | ||
| Tree-based ortholog | many-to-1 | TP3G06830 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0010G16050 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0010G16050 | 1 | ||
| Tree-based ortholog | many-to-1 | TC0010G16050 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV06G10720 | 1 | |
| Anchor point | many-to-1 | VV06G10720 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV06G10720 | 1 | ||
| Tree-based ortholog | many-to-1 | VV06G10720 | 1 |