Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PT05G21920
(Populus trichocarpa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Populus trichocarpa | Orthologous gene family | PT05G21920 | 1 |  |
| Anchor point | PT13G04230 PT05G05480 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | PT05G21920 | 1 | ||
| Tree-based ortholog | PT05G21920 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Anchor point | many-to-1 | ATR_00002G04900 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00002G04900 | 1 | ||
| Tree-based ortholog | 1-to-1 | ATR_00002G04900 | 1 | ||
| Arabidopsis lyrata | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL8G23470 | 1 | |
| Arabidopsis thaliana | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT3G04710 | 1 | |
| Tree-based ortholog | 1-to-1 | AT3G04710 | 1 | ||
| Beta vulgaris | Anchor point | many-to-1 | BV5G13120 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV4G11130 | 1 | ||
| Tree-based ortholog | 1-to-1 | BV5G13120 | 1 | ||
| Brassica rapa | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR01G40710 | 1 | |
| Tree-based ortholog | 1-to-many | BR01G40710 BR03G29660 | 2 | ||
| Capsella rubella | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_003G03700 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_003G03700 | 1 | ||
| Carica papaya | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00065G01290 | 1 | |
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CR05G01430 CR08G02500 CR02G05750 ... | 6 | |
| Tree-based ortholog | 1-to-1 | CR10G06860 | 1 | ||
| Citrullus lanatus | Anchor point | many-to-1 | CL02G16990 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL02G16990 | 1 | ||
| Tree-based ortholog | 1-to-1 | CL02G16990 | 1 | ||
| Citrus sinensis | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00124G00220 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00124G00220 | 1 | ||
| Cucumis melo | Anchor point | many-to-1 | CM00003G05160 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00003G05160 | 1 | ||
| Tree-based ortholog | 1-to-1 | CM00003G05160 | 1 | ||
| Eucalyptus grandis | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0008G34940 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0008G34940 | 1 | ||
| Fragaria vesca | Anchor point | many-to-1 | FV0G25710 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV0G25710 | 1 | ||
| Tree-based ortholog | 1-to-1 | FV0G25710 | 1 | ||
| Glycine max | Anchor point | many-to-1 | GM03G40780 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM19G43490 GM03G40780 | 2 | ||
| Tree-based ortholog | 1-to-many | GM03G40780 GM19G43490 | 2 | ||
| Gossypium raimondii | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR13G20030 | 1 | |
| Tree-based ortholog | 1-to-1 | GR13G20030 | 1 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ1G054810 | 1 | |
| Malus domestica | Anchor point | many-to-1 | MD04G018390 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD04G018390 | 1 | ||
| Tree-based ortholog | 1-to-1 | MD04G018390 | 1 | ||
| Manihot esculenta | Anchor point | many-to-many | ME03802G00540 ME03614G03300 ME11998G00130 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME03802G00540 | 1 | ||
| Tree-based ortholog | 1-to-1 | ME11998G00130 | 1 | ||
| Medicago truncatula | Anchor point | many-to-1 | MT7G115280 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT7G115280 | 1 | ||
| Tree-based ortholog | 1-to-1 | MT7G115280 | 1 | ||
| Oryza sativa ssp. japonica | Anchor point | many-to-1 | OS12G40770 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS05G01310 | 1 | ||
| Tree-based ortholog | 1-to-1 | OS05G01310 | 1 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL09G02830 | 1 | |
| Tree-based ortholog | 1-to-1 | OL09G00030 | 1 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00006G00530 PP00060G00960 | 2 | |
| Tree-based ortholog | 1-to-many | PP00060G00960 PP00006G00530 | 2 | ||
| Prunus persica | Anchor point | many-to-1 | PPE_006G34880 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_006G34880 | 1 | ||
| Tree-based ortholog | 1-to-1 | PPE_006G34880 | 1 | ||
| Ricinus communis | Anchor point | many-to-1 | RC29598G00080 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29598G00080 | 1 | ||
| Tree-based ortholog | 1-to-1 | RC29598G00080 | 1 | ||
| Solanum lycopersicum | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL01G097190 | 1 | |
| Tree-based ortholog | 1-to-1 | SL01G097210 | 1 | ||
| Solanum tuberosum | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST01G034670 | 1 | |
| Tree-based ortholog | 1-to-many | ST01G034670 ST01G034690 ST01G034700 | 3 | ||
| Thellungiella parvula | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP3G03550 | 1 | |
| Tree-based ortholog | 1-to-1 | TP3G03550 | 1 | ||
| Theobroma cacao | Anchor point | many-to-1 | TC0005G27980 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0005G27980 | 1 | ||
| Tree-based ortholog | 1-to-1 | TC0005G27980 | 1 | ||
| Vitis vinifera | Anchor point | many-to-1 | VV14G15120 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV14G15120 | 1 | ||
| Tree-based ortholog | 1-to-1 | VV14G15120 | 1 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM08G21820 | 1 | |
| Tree-based ortholog | 1-to-1 | ZM08G21820 | 1 |