Integrative Orthology Viewer: PT05G13990 (Populus trichocarpa)
Inparalogs
Organism | Source | Genes | #genes | Details |
---|---|---|---|---|
Populus trichocarpa | Orthologous gene family | PT05G13990 PT07G04550 | 2 | |
Anchor point | PT09G10010 PT07G04550 PT01G30490 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | PT07G04550 PT05G13990 | 2 | ||
Tree-based ortholog | PT05G13990 PT07G04550 | 2 |
Orthologs
Organism | Source | Type | Genes | #genes | Details |
---|---|---|---|---|---|
Amborella trichopoda | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00046G00150 | 1 | |
Tree-based ortholog | many-to-1 | ATR_00046G00150 | 1 | ||
Arabidopsis lyrata | Anchor point | many-to-1 | AL8G33400 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL7G07020 | 1 | ||
Tree-based ortholog | many-to-many | AL1G39910 AL8G07750 AL7G07020 ... | 4 | ||
Arabidopsis thaliana | Anchor point | many-to-many | AT2G15530 AT5G67120 | 2 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT4G34040 | 1 | ||
Tree-based ortholog | many-to-many | AT1G45180 AT5G42940 AT4G34040 ... | 4 | ||
Beta vulgaris | Anchor point | many-to-many | BV0G19850 BV1G14680 | 2 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV1G14680 | 1 | ||
Tree-based ortholog | many-to-many | BV9G04260 BV1G14680 | 2 | ||
Brassica rapa | Anchor point | many-to-1 | BR07G11360 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BR10G04290 | 1 | ||
Tree-based ortholog | many-to-many | BR08G04970 BR06G38950 BR09G20440 ... | 5 | ||
Capsella rubella | Anchor point | many-to-1 | CRU_008G26550 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_007G06020 | 1 | ||
Tree-based ortholog | many-to-many | CRU_001G33870 CRU_001G33850 CRU_008G05690 ... | 4 | ||
Carica papaya | Anchor point | many-to-1 | CP00055G01260 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-many | CP00055G01260 CP00055G01300 CP32935G00010 ... | 6 | ||
Tree-based ortholog | many-to-1 | CP00021G01720 | 1 | ||
Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR10G05410 | 1 | |
Tree-based ortholog | many-to-1 | CR10G05410 | 1 | ||
Citrullus lanatus | Anchor point | many-to-1 | CL08G15730 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL08G15730 | 1 | ||
Tree-based ortholog | many-to-1 | CL08G15730 | 1 | ||
Citrus sinensis | Anchor point | many-to-many | CS00006G01930 CS00002G02710 CS00065G00310 | 3 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00002G02710 | 1 | ||
Tree-based ortholog | many-to-many | CS00002G02710 CS00065G00320 CS00065G00310 | 3 | ||
Cucumis melo | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00014G01940 | 1 | |
Tree-based ortholog | many-to-1 | CM00014G01940 | 1 | ||
Eucalyptus grandis | Anchor point | many-to-many | EG0009G08920 EG0006G01780 EG0006G19020 | 3 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | EG0006G01780 | 1 | ||
Tree-based ortholog | many-to-many | EG0006G01780 EG0006G19020 EG0009G08920 | 3 | ||
Fragaria vesca | Anchor point | many-to-1 | FV2G33580 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV2G33580 | 1 | ||
Tree-based ortholog | many-to-many | FV2G33580 FV2G23890 | 2 | ||
Glycine max | Anchor point | many-to-many | GM17G35940 GM06G04410 GM04G04210 ... | 5 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-many | GM06G04410 GM04G04220 GM04G04210 | 3 | ||
Tree-based ortholog | many-to-many | GM04G04220 GM04G04210 GM06G04410 ... | 6 | ||
Gossypium raimondii | Orthologous gene family | many-to-many | GR07G21490 GR07G21500 | 2 | |
Anchor point | many-to-many | GR10G02150 GR07G21490 GR13G04520 ... | 5 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-many | GR07G21500 GR07G21490 | 2 | ||
Tree-based ortholog | many-to-many | GR07G21500 GR07G21490 GR08G07740 | 3 | ||
Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ1G063970 | 1 | |
Tree-based ortholog | many-to-many | LJ1G063970 LJ2G010710 | 2 | ||
Malus domestica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MD00G274420 | 1 | |
Tree-based ortholog | many-to-many | MD00G274420 MD05G023550 MD00G483890 ... | 4 | ||
Manihot esculenta | Orthologous gene family | many-to-1 | ME03060G00390 | 1 | |
Anchor point | many-to-1 | ME03060G00390 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ME03060G00390 | 1 | ||
Tree-based ortholog | many-to-many | ME03484G00290 ME03484G00280 | 2 | ||
Medicago truncatula | Anchor point | many-to-many | MT1G019200 MT4G085630 MT5G016920 | 3 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT1G019200 | 1 | ||
Tree-based ortholog | many-to-many | MT1G019200 MT4G085630 | 2 | ||
Oryza sativa ssp. japonica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS04G55510 | 1 | |
Tree-based ortholog | many-to-many | OS04G10680 OS04G55510 | 2 | ||
Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL10G02390 | 1 | |
Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00162G00360 PP00254G00180 | 2 | |
Tree-based ortholog | many-to-many | PP00254G00180 PP00162G00360 | 2 | ||
Prunus persica | Anchor point | many-to-many | PPE_001G43780 PPE_008G14730 | 2 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_001G43780 | 1 | ||
Tree-based ortholog | many-to-many | PPE_001G43780 PPE_008G14730 | 2 | ||
Ricinus communis | Orthologous gene family | many-to-1 | RC30115G00630 | 1 | |
Anchor point | many-to-many | RC30115G00620 RC30170G01970 RC29801G01050 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC30115G00630 | 1 | ||
Tree-based ortholog | many-to-1 | RC30115G00620 | 1 | ||
Solanum lycopersicum | Anchor point | many-to-many | SL04G078680 SL12G088740 SL01G107930 | 3 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL04G078680 | 1 | ||
Tree-based ortholog | many-to-many | SL12G088740 SL04G078680 SL10G050170 ... | 5 | ||
Solanum tuberosum | Anchor point | many-to-many | ST01G045080 ST04G031620 ST10G015650 ... | 4 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST04G031620 | 1 | ||
Tree-based ortholog | many-to-many | ST12G026890 ST04G031620 ST10G016820 ... | 5 | ||
Thellungiella parvula | Anchor point | many-to-many | TP3G28780 TP1G33980 | 2 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP1G33980 | 1 | ||
Tree-based ortholog | many-to-many | TP1G33980 TP2G07690 TP7G31770 ... | 4 | ||
Theobroma cacao | Orthologous gene family | many-to-1 | TC0001G05620 | 1 | |
Anchor point | many-to-many | TC0001G05620 TC0008G00380 TC0002G09890 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0001G05620 | 1 | ||
Tree-based ortholog | many-to-many | TC0008G00380 TC0002G09890 | 2 | ||
Vitis vinifera | Anchor point | many-to-many | VV07G05290 VV03G06470 VV18G06900 | 3 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV18G06900 | 1 | ||
Tree-based ortholog | many-to-many | VV07G05300 VV07G05290 VV07G05310 ... | 4 | ||
Zea mays | Anchor point | many-to-1 | ZM02G02550 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM02G02550 | 1 | ||
Tree-based ortholog | many-to-many | ZM02G20030 ZM02G02550 | 2 |