Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PT05G13750
(Populus trichocarpa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Populus trichocarpa | Orthologous gene family | PT05G13750 PT07G04230 | 2 |  |
| Anchor point | PT04G14210 PT07G04230 PT09G10360 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | PT05G13750 PT07G04230 | 2 | ||
| Tree-based ortholog | PT07G04230 PT05G13750 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00126G00330 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00126G00330 | 1 | ||
| Tree-based ortholog | many-to-1 | ATR_00126G00330 | 1 | ||
| Arabidopsis lyrata | Anchor point | many-to-1 | AL1G43900 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL3G20680 | 1 | ||
| Tree-based ortholog | many-to-many | AL1G43900 AL3G20680 | 2 | ||
| Arabidopsis thaliana | Anchor point | many-to-1 | AT1G49620 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT3G19150 | 1 | ||
| Tree-based ortholog | many-to-many | AT1G49620 AT3G19150 | 2 | ||
| Beta vulgaris | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV0G03660 | 1 | |
| Tree-based ortholog | many-to-1 | BV0G03660 | 1 | ||
| Brassica rapa | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BR09G43730 | 1 | |
| Tree-based ortholog | many-to-1 | BR03G35810 | 1 | ||
| Capsella rubella | Anchor point | many-to-1 | CRU_001G36910 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_003G18100 | 1 | ||
| Tree-based ortholog | many-to-many | CRU_001G36910 CRU_003G18100 | 2 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00055G01660 | 1 | |
| Anchor point | many-to-many | CP00062G00280 CP00055G01660 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00055G01660 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00055G01660 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL02G13050 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL09G08520 | 1 | ||
| Tree-based ortholog | many-to-1 | CL07G00420 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00006G02260 | 1 | |
| Anchor point | many-to-1 | CS00006G02260 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00006G02260 | 1 | ||
| Tree-based ortholog | many-to-1 | CS00006G02260 | 1 | ||
| Cucumis melo | Anchor point | many-to-1 | CM00034G00450 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00034G00450 | 1 | ||
| Tree-based ortholog | many-to-1 | CM00034G00450 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0008G16580 | 1 | |
| Anchor point | many-to-many | EG0008G16580 EG0007G10690 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | EG0008G16580 | 1 | ||
| Tree-based ortholog | many-to-1 | EG0008G16580 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV1G18530 | 1 | |
| Anchor point | many-to-1 | FV1G18530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV1G18530 | 1 | ||
| Tree-based ortholog | many-to-1 | FV1G18530 | 1 | ||
| Glycine max | Anchor point | many-to-many | GM07G33360 GM11G06050 GM17G20200 ... | 6 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GM11G06050 GM01G39220 | 2 | ||
| Tree-based ortholog | many-to-many | GM01G39220 GM11G06050 GM05G16070 | 3 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR07G21180 GR08G07480 | 2 | |
| Anchor point | many-to-many | GR11G10540 GR08G07480 GR13G04260 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GR07G21180 GR08G07480 | 2 | ||
| Tree-based ortholog | many-to-many | GR07G21180 GR11G10540 GR08G07480 | 3 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ4G012370 | 1 | |
| Tree-based ortholog | many-to-1 | LJ4G012370 | 1 | ||
| Malus domestica | Anchor point | many-to-many | MD15G021790 MD02G015110 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | MD02G015110 MD00G318930 MD15G021790 | 3 | ||
| Tree-based ortholog | many-to-many | MD15G021790 MD00G318930 MD02G015110 | 3 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME00319G00020 ME03175G00090 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | ME03175G00090 ME00319G00020 | 2 | ||
| Tree-based ortholog | many-to-many | ME03175G00090 ME00319G00020 | 2 | ||
| Medicago truncatula | Anchor point | many-to-many | MT5G017600 MT4G086450 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT5G017600 | 1 | ||
| Tree-based ortholog | many-to-1 | MT5G017600 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | many-to-1 | OS11G40030 | 1 | |
| Prunus persica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_008G21860 | 1 | |
| Tree-based ortholog | many-to-1 | PPE_001G00600 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC30115G00070 | 1 | |
| Anchor point | many-to-many | RC29801G01480 RC30115G00070 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC30115G00070 | 1 | ||
| Tree-based ortholog | many-to-1 | RC30115G00070 | 1 | ||
| Solanum lycopersicum | Anchor point | many-to-many | SL01G108610 SL02G090680 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL02G090680 | 1 | ||
| Tree-based ortholog | many-to-many | SL02G090680 SL03G044480 | 2 | ||
| Solanum tuberosum | Anchor point | many-to-many | ST01G045850 ST02G032160 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST02G032160 | 1 | ||
| Tree-based ortholog | many-to-1 | ST02G032160 | 1 | ||
| Thellungiella parvula | Anchor point | many-to-1 | TP1G36490 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP3G17220 | 1 | ||
| Tree-based ortholog | many-to-many | TP1G36490 TP3G17220 | 2 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0001G05140 | 1 | |
| Anchor point | many-to-many | TC0002G09450 TC0001G05140 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0001G05140 | 1 | ||
| Tree-based ortholog | many-to-1 | TC0001G05140 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV07G05650 | 1 | |
| Anchor point | many-to-many | VV07G05650 VV03G06910 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV07G05650 | 1 | ||
| Tree-based ortholog | many-to-1 | VV07G05650 | 1 | ||
| Zea mays | Tree-based ortholog | many-to-many | ZM04G02170 ZM09G01490 | 2 | |