Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PT01G28950
(Populus trichocarpa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Populus trichocarpa | Orthologous gene family | PT01G28950 | 1 |  |
| Anchor point | PT09G08510 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | PT17G08100 PT09G08510 PT01G28950 | 3 | ||
| Tree-based ortholog | PT01G28950 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00033G00510 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00033G00510 | 1 | ||
| Arabidopsis lyrata | Anchor point | 1-to-1 | AL1G44410 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | AL1G44410 AL8G05560 | 2 | ||
| Tree-based ortholog | 1-to-many | AL1G44410 AL8G05560 AL3G21290 | 3 | ||
| Arabidopsis thaliana | Anchor point | 1-to-1 | AT1G50010 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT4G14960 | 1 | ||
| Tree-based ortholog | 1-to-many | AT1G50010 AT1G04820 AT4G14960 | 3 | ||
| Beta vulgaris | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV6G15010 | 1 | |
| Tree-based ortholog | 1-to-1 | BV6G15010 | 1 | ||
| Brassica rapa | Anchor point | 1-to-1 | BR06G03240 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BR06G03240 | 1 | ||
| Tree-based ortholog | 1-to-many | BR08G03140 BR06G03240 BR00G01550 | 3 | ||
| Capsella rubella | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_151G00030 | 1 | |
| Tree-based ortholog | 1-to-many | CRU_151G00030 CRU_001G37260 | 2 | ||
| Carica papaya | Anchor point | 1-to-1 | CP00129G00410 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00129G00410 | 1 | ||
| Tree-based ortholog | 1-to-many | CP00129G00410 CP00160G00090 | 2 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | many-to-many | CR04G00210 CR03G10780 | 2 | |
| Tree-based ortholog | 1-to-many | CR03G10780 CR04G00210 | 2 | ||
| Citrullus lanatus | Anchor point | 1-to-many | CL02G07210 CL10G08260 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL01G18250 | 1 | ||
| Tree-based ortholog | 1-to-many | CL02G07210 CL10G08260 CL05G25530 ... | 4 | ||
| Citrus sinensis | Anchor point | 1-to-many | CS00006G00370 CS00236G00160 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00236G00160 | 1 | ||
| Tree-based ortholog | 1-to-1 | CS00006G00370 | 1 | ||
| Cucumis melo | Anchor point | 1-to-many | CM00007G07010 CM00031G05100 CM00034G01480 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00031G05100 | 1 | ||
| Tree-based ortholog | 1-to-many | CM00034G01480 CM00031G05100 CM00007G07010 | 3 | ||
| Eucalyptus grandis | Anchor point | 1-to-1 | EG0007G08660 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | EG0007G08660 | 1 | ||
| Tree-based ortholog | 1-to-many | EG0006G17790 EG0006G04100 EG0007G08660 | 3 | ||
| Fragaria vesca | Anchor point | 1-to-1 | FV2G02770 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV2G02770 | 1 | ||
| Tree-based ortholog | 1-to-many | FV5G24250 FV2G02770 | 2 | ||
| Glycine max | Anchor point | 1-to-many | GM17G16831 GM10G40150 GM20G27280 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GM10G40150 GM20G27280 | 2 | ||
| Tree-based ortholog | 1-to-many | GM17G16831 GM05G23230 GM20G27280 ... | 6 | ||
| Gossypium raimondii | Anchor point | 1-to-many | GR09G22480 GR05G22960 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GR12G14700 | 1 | ||
| Tree-based ortholog | 1-to-many | GR08G08740 GR05G09780 GR01G25560 ... | 6 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ4G041450 | 1 | |
| Tree-based ortholog | 1-to-1 | LJ1G064570 | 1 | ||
| Malus domestica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MD05G021060 | 1 | |
| Tree-based ortholog | 1-to-many | MD00G315200 MD00G133610 MD00G305680 ... | 17 | ||
| Manihot esculenta | Best-Hits-and-Inparalogs(BHI)family | many-to-many | ME07708G00040 ME08463G00010 ME08463G00020 | 3 | |
| Tree-based ortholog | 1-to-many | ME04020G00100 ME07708G00040 ME08463G00010 ... | 4 | ||
| Medicago truncatula | Anchor point | 1-to-1 | MT1G106005 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT1G106005 | 1 | ||
| Tree-based ortholog | 1-to-many | MT1G106005 MT3G110720 | 2 | ||
| Oryza sativa ssp. japonica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS11G14220 | 1 | |
| Tree-based ortholog | 1-to-many | OS03G51600 OS11G14220 | 2 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | many-to-many | OL12G01340 OL08G03660 | 2 | |
| Tree-based ortholog | 1-to-many | OL08G03660 OL12G01340 | 2 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PP00070G00900 | 1 | |
| Tree-based ortholog | 1-to-1 | PP00094G00300 | 1 | ||
| Prunus persica | Anchor point | 1-to-many | PPE_008G16880 PPE_001G57320 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_008G16880 | 1 | ||
| Tree-based ortholog | 1-to-many | PPE_001G57320 PPE_006G22200 PPE_008G16880 | 3 | ||
| Ricinus communis | Anchor point | 1-to-1 | RC30099G00690 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC30099G00690 | 1 | ||
| Tree-based ortholog | 1-to-many | RC30099G00690 RC30170G00180 | 2 | ||
| Solanum lycopersicum | Anchor point | 1-to-many | SL04G077020 SL02G091870 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL02G087880 | 1 | ||
| Tree-based ortholog | 1-to-many | SL02G091870 SL04G077020 SL08G006890 ... | 5 | ||
| Solanum tuberosum | Anchor point | 1-to-1 | ST02G030350 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST04G029950 | 1 | ||
| Tree-based ortholog | 1-to-many | ST02G030350 ST02G010740 ST04G029950 ... | 6 | ||
| Thellungiella parvula | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP4G01790 | 1 | |
| Tree-based ortholog | 1-to-1 | TP4G01790 | 1 | ||
| Theobroma cacao | Anchor point | 1-to-many | TC0002G11540 TC0008G07680 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0002G11540 | 1 | ||
| Tree-based ortholog | 1-to-many | TC0001G07760 TC0008G07680 TC0002G11540 | 3 | ||
| Vitis vinifera | Anchor point | 1-to-1 | VV03G09220 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV08G08540 | 1 | ||
| Tree-based ortholog | 1-to-1 | VV00G17120 | 1 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM05G04960 | 1 | |
| Tree-based ortholog | 1-to-many | ZM05G04960 ZM01G51400 ZM05G03360 ... | 8 |