Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PP00249G00580
(Physcomitrella patens)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Physcomitrella patens | Orthologous gene family | PP00249G00580 PP00277G00310 | 2 |  |
| Best-Hits-and-Inparalogs(BHI)family | PP00249G00580 PP00277G00310 | 2 | ||
| Tree-based ortholog | PP00249G00580 PP00277G00310 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00004G01930 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00004G01930 | 1 | ||
| Tree-based ortholog | many-to-1 | ATR_00004G01930 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL5G18860 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL5G18860 | 1 | ||
| Tree-based ortholog | many-to-1 | AL5G18860 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT3G49640 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT3G49640 | 1 | ||
| Tree-based ortholog | many-to-1 | AT3G49640 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV6G01700 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV6G01700 | 1 | ||
| Tree-based ortholog | many-to-1 | BV6G01700 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-1 | BR06G16100 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BR06G16100 | 1 | ||
| Tree-based ortholog | many-to-1 | BR06G16100 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-1 | CRU_005G14910 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_005G14910 | 1 | ||
| Tree-based ortholog | many-to-1 | CRU_005G14910 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00129G00260 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00129G00260 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00129G00260 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR13G06850 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR13G06850 | 1 | ||
| Tree-based ortholog | many-to-1 | CR13G06850 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL01G18370 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL01G18370 | 1 | ||
| Tree-based ortholog | many-to-1 | CL01G18370 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00006G00230 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00006G00230 | 1 | ||
| Tree-based ortholog | many-to-1 | CS00006G00230 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00007G07160 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00007G07160 | 1 | ||
| Tree-based ortholog | many-to-1 | CM00007G07160 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0008G19280 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | EG0008G19280 | 1 | ||
| Tree-based ortholog | many-to-1 | EG0008G19280 | 1 | ||
| Fragaria vesca | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV1G17800 | 1 | |
| Glycine max | Orthologous gene family | many-to-many | GM01G23820 GM08G36840 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GM08G36840 GM01G23820 | 2 | ||
| Tree-based ortholog | many-to-many | GM01G23820 GM08G36840 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-1 | GR03G03530 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GR03G03530 | 1 | ||
| Tree-based ortholog | many-to-1 | GR03G03530 | 1 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ1G042940 | 1 | |
| Malus domestica | Orthologous gene family | many-to-1 | MD00G149450 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MD00G149450 | 1 | ||
| Tree-based ortholog | many-to-many | MD00G149450 MD06G001450 MD00G369400 | 3 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME02969G00170 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ME02969G00170 | 1 | ||
| Tree-based ortholog | many-to-1 | ME02969G00170 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT8G067420 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT8G067420 | 1 | ||
| Tree-based ortholog | many-to-1 | MT8G067420 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS04G44890 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS04G44890 | 1 | ||
| Tree-based ortholog | many-to-1 | OS04G44890 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL03G01880 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL03G01880 | 1 | ||
| Tree-based ortholog | many-to-1 | OL03G01880 | 1 | ||
| Populus trichocarpa | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PT07G04730 | 1 | |
| Prunus persica | Orthologous gene family | many-to-1 | PPE_005G01690 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_005G01690 | 1 | ||
| Tree-based ortholog | many-to-1 | PPE_005G01690 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC28179G00160 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC28179G00160 | 1 | ||
| Tree-based ortholog | many-to-1 | RC28179G00160 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL06G073230 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL06G073230 | 1 | ||
| Tree-based ortholog | many-to-1 | SL06G073230 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST06G027750 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST06G027750 | 1 | ||
| Tree-based ortholog | many-to-1 | ST06G027750 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP5G12460 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP5G12460 | 1 | ||
| Tree-based ortholog | many-to-1 | TP5G12460 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0001G07950 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0001G07950 | 1 | ||
| Tree-based ortholog | many-to-1 | TC0001G07950 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV00G13650 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV00G13650 | 1 | ||
| Tree-based ortholog | many-to-many | VV07G03150 VV00G13650 | 2 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM10G20840 | 1 | |
| Tree-based ortholog | many-to-1 | ZM10G20840 | 1 |