Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
OS02G56300
(Oryza sativa ssp. japonica)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Oryza sativa ssp. japonica | Orthologous gene family | OS02G56300 OS03G14800 OS10G11200 | 3 |  |
| Best-Hits-and-Inparalogs(BHI)family | OS02G56300 OS10G11200 | 2 | ||
| Tree-based ortholog | OS10G11200 OS02G56300 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00168G00030 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00168G00030 | 1 | ||
| Tree-based ortholog | many-to-1 | ATR_00168G00030 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL7G04350 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL7G04350 | 1 | ||
| Tree-based ortholog | many-to-1 | AL7G04350 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT4G36480 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT4G36480 | 1 | ||
| Tree-based ortholog | many-to-1 | AT4G36480 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV0G62080 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV0G62080 | 1 | ||
| Tree-based ortholog | many-to-1 | BV0G62080 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR01G02180 BR03G55250 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BR03G55250 | 1 | ||
| Tree-based ortholog | many-to-many | BR03G55250 BR01G02180 | 2 | ||
| Capsella rubella | Orthologous gene family | many-to-1 | CRU_007G03580 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_007G03580 | 1 | ||
| Tree-based ortholog | many-to-1 | CRU_007G03580 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00007G00640 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00007G00640 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00007G00640 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR03G01410 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR03G01410 | 1 | ||
| Tree-based ortholog | many-to-1 | CR03G01410 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL08G15760 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL08G15760 | 1 | ||
| Tree-based ortholog | many-to-1 | CL08G15760 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00074G00750 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00074G00750 | 1 | ||
| Tree-based ortholog | many-to-1 | CS00074G00750 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00014G01910 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00014G01910 | 1 | ||
| Tree-based ortholog | many-to-1 | CM00014G01910 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0004G02340 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | EG0004G02340 | 1 | ||
| Tree-based ortholog | many-to-1 | EG0004G02340 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV2G33420 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV2G33420 | 1 | ||
| Tree-based ortholog | many-to-many | FV6G20750 FV2G33420 | 2 | ||
| Glycine max | Orthologous gene family | many-to-many | GM14G09380 GM17G35800 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GM14G09380 GM17G35800 | 2 | ||
| Tree-based ortholog | many-to-many | GM14G09380 GM17G35800 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR02G09070 GR11G00240 GR11G09120 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GR11G09120 GR11G00240 | 2 | ||
| Tree-based ortholog | many-to-many | GR11G09120 GR02G09070 GR11G00240 | 3 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ5G003190 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ5G003190 | 1 | ||
| Tree-based ortholog | many-to-1 | LJ5G003190 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD08G010770 MD15G002490 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MD15G002490 | 1 | ||
| Tree-based ortholog | many-to-many | MD00G008780 MD08G010770 MD15G002490 | 3 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME02811G00090 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ME02811G00090 | 1 | ||
| Tree-based ortholog | many-to-1 | ME02811G00090 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT1G018970 MT3G054030 MT5G072020 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | MT3G054030 MT5G072020 | 2 | ||
| Tree-based ortholog | many-to-many | MT5G072020 MT3G054030 MT1G018970 | 3 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL01G02700 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL01G02700 | 1 | ||
| Tree-based ortholog | many-to-1 | OL01G02700 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-1 | PP00311G00420 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PP00311G00420 | 1 | ||
| Tree-based ortholog | many-to-1 | PP00311G00420 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT12G04380 PT15G03460 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | PT12G04380 PT15G03460 | 2 | ||
| Tree-based ortholog | many-to-many | PT12G04380 PT15G03460 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_001G43670 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_001G43670 | 1 | ||
| Tree-based ortholog | many-to-1 | PPE_001G43670 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC29983G02000 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC29983G02000 | 1 | ||
| Tree-based ortholog | many-to-1 | RC29983G02000 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL08G066020 SL11G019950 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL11G019950 | 1 | ||
| Tree-based ortholog | many-to-many | SL08G066020 SL11G019950 | 2 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST08G015030 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST08G015030 | 1 | ||
| Tree-based ortholog | many-to-1 | ST08G015030 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP7G34130 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP7G34130 | 1 | ||
| Tree-based ortholog | many-to-1 | TP7G34130 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0006G05610 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0006G05610 | 1 | ||
| Tree-based ortholog | many-to-1 | TC0006G05610 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV07G01250 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV07G01250 | 1 | ||
| Tree-based ortholog | many-to-1 | VV07G01250 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM01G09880 ZM09G24620 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | ZM01G09880 ZM09G24620 | 2 | ||
| Tree-based ortholog | many-to-many | ZM09G24620 ZM02G21470 | 2 |