Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
LJ4G038720
(Lotus japonicus)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Lotus japonicus | Orthologous gene family | LJ4G038720 LJ6G023930 | 2 |  |
| Best-Hits-and-Inparalogs(BHI)family | LJ4G038720 | 1 | ||
| Tree-based ortholog | LJ6G023930 LJ4G038720 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00019G04570 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00019G04570 | 1 | ||
| Tree-based ortholog | many-to-1 | ATR_00019G04570 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL3G06360 AL6G19040 | 2 | |
| Anchor point | N/A | AL6G19040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL6G19040 | 1 | ||
| Tree-based ortholog | many-to-many | AL3G06360 AL6G19040 | 2 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT5G18900 | 1 | |
| Anchor point | N/A | AT5G18900 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT5G18900 | 1 | ||
| Tree-based ortholog | many-to-many | AT3G06300 AT5G18900 | 2 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV0G58550 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G58550 | 1 | ||
| Tree-based ortholog | many-to-1 | BV0G58550 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR02G09230 BR10G15890 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | BR10G15890 BR02G09230 | 2 | ||
| Tree-based ortholog | many-to-many | BR03G30370 BR02G34230 BR02G09230 ... | 4 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_003G05490 CRU_006G16770 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_006G16770 | 1 | ||
| Tree-based ortholog | many-to-many | CRU_003G05490 CRU_006G16770 | 2 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00016G00840 | 1 | |
| Anchor point | N/A | CP00016G00830 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00014G00610 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00016G00840 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CR08G03200 CR10G05470 | 2 | |
| Tree-based ortholog | many-to-many | CR14G04080 CR10G05470 CR05G01460 ... | 13 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL06G05400 | 1 | |
| Anchor point | N/A | CL06G05400 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL06G05400 | 1 | ||
| Tree-based ortholog | many-to-1 | CL05G06340 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00011G02230 | 1 | |
| Anchor point | N/A | CS00011G02230 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00011G02230 | 1 | ||
| Tree-based ortholog | many-to-1 | CS00011G02230 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00047G02570 | 1 | |
| Anchor point | N/A | CM00047G02570 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00047G02570 | 1 | ||
| Tree-based ortholog | many-to-1 | CM00006G06960 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0008G29580 | 1 | |
| Anchor point | N/A | EG0008G29580 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0008G29580 | 1 | ||
| Tree-based ortholog | many-to-1 | EG0008G29580 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV4G11350 | 1 | |
| Anchor point | N/A | FV4G11350 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV4G11350 | 1 | ||
| Tree-based ortholog | many-to-1 | FV4G11350 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM07G38330 GM13G28380 GM15G10670 ... | 4 | |
| Anchor point | N/A | GM15G10670 GM17G02430 GM07G38330 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM17G02430 GM07G38330 | 2 | ||
| Tree-based ortholog | many-to-many | GM15G10670 GM13G28380 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR06G25650 GR11G18280 | 2 | |
| Anchor point | N/A | GR11G18280 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GR06G25650 GR11G18280 | 2 | ||
| Tree-based ortholog | many-to-many | GR06G25650 GR11G18280 | 2 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G517770 MD16G013100 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD00G517770 | 1 | ||
| Tree-based ortholog | many-to-many | MD00G517770 MD00G215580 MD16G013100 | 3 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME01551G02940 | 1 | |
| Anchor point | N/A | ME01551G02940 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME01551G02940 | 1 | ||
| Tree-based ortholog | many-to-1 | ME01551G02940 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT2G020800 MT4G118560 | 2 | |
| Anchor point | N/A | MT4G118560 MT2G020800 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT4G118560 | 1 | ||
| Tree-based ortholog | many-to-1 | MT2G020800 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS05G41010 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS05G41010 | 1 | ||
| Tree-based ortholog | many-to-1 | OS05G41010 | 1 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL04G04850 | 1 | |
| Tree-based ortholog | many-to-1 | OL04G00150 | 1 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00192G00200 | 1 | |
| Tree-based ortholog | many-to-1 | PP00192G00200 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-1 | PT08G19770 | 1 | |
| Anchor point | N/A | PT10G02720 PT08G19770 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT08G19770 | 1 | ||
| Tree-based ortholog | many-to-1 | PT08G19770 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_001G13780 | 1 | |
| Anchor point | N/A | PPE_001G13780 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_001G13780 | 1 | ||
| Tree-based ortholog | many-to-1 | PPE_001G13780 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC29726G00650 | 1 | |
| Anchor point | N/A | RC29726G00650 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29726G00650 | 1 | ||
| Tree-based ortholog | many-to-1 | RC29726G00650 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL01G080530 SL06G054490 | 2 | |
| Anchor point | N/A | SL01G080530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL06G054490 | 1 | ||
| Tree-based ortholog | many-to-many | SL06G054490 SL01G080530 | 2 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST01G022480 ST06G018240 | 2 | |
| Anchor point | N/A | ST01G022480 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST01G022480 | 1 | ||
| Tree-based ortholog | many-to-many | ST06G018240 ST01G022480 | 2 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP6G25490 | 1 | |
| Anchor point | N/A | TP6G25490 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP6G25490 | 1 | ||
| Tree-based ortholog | many-to-many | TP3G05210 TP6G25490 | 2 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0004G27550 | 1 | |
| Anchor point | N/A | TC0004G27550 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0004G27550 | 1 | ||
| Tree-based ortholog | many-to-1 | TC0004G27550 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV05G03770 | 1 | |
| Anchor point | N/A | VV05G03770 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV05G03770 | 1 | ||
| Tree-based ortholog | many-to-1 | VV05G03770 | 1 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM05G11230 ZM01G44500 | 2 | |
| Tree-based ortholog | many-to-1 | ZM06G27090 | 1 |