Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
GR13G25370
(Gossypium raimondii)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Gossypium raimondii | Orthologous gene family | GR13G25370 | 1 |  |
| Best-Hits-and-Inparalogs(BHI)family | GR13G25470 GR13G25460 GR13G25370 | 3 | ||
| Tree-based ortholog | GR13G25480 GR13G25460 GR13G25370 | 3 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Best-Hits-and-Inparalogs(BHI)family | many-to-many | ATR_00002G02730 ATR_00002G02750 ATR_00002G02760 | 3 | |
| Tree-based ortholog | many-to-many | ATR_00058G00280 ATR_00002G02730 ATR_00002G02760 ... | 4 | ||
| Arabidopsis lyrata | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL3G05530 | 1 | |
| Tree-based ortholog | many-to-many | AL4G09680 AL4G09670 AL3G05530 | 3 | ||
| Arabidopsis thaliana | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT3G05600 | 1 | |
| Tree-based ortholog | many-to-many | AT2G26750 AT2G26740 AT3G05600 | 3 | ||
| Beta vulgaris | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV4G09650 | 1 | |
| Tree-based ortholog | many-to-1 | BV4G09650 | 1 | ||
| Brassica rapa | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BR03G43030 | 1 | |
| Tree-based ortholog | many-to-many | BR04G15230 BR05G34760 | 2 | ||
| Capsella rubella | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_007G24540 | 1 | |
| Tree-based ortholog | many-to-many | CRU_004G07040 CRU_004G07030 CRU_003G04710 ... | 4 | ||
| Carica papaya | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00151G00160 | 1 | |
| Tree-based ortholog | many-to-1 | CP00014G01570 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | many-to-many | CR01G02480 CR12G17190 | 2 | |
| Tree-based ortholog | many-to-many | CR01G02480 CR12G17190 | 2 | ||
| Citrullus lanatus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL05G07010 | 1 | |
| Tree-based ortholog | many-to-1 | CL03G16870 | 1 | ||
| Citrus sinensis | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00016G00520 | 1 | |
| Tree-based ortholog | many-to-many | CS05608G00010 CS00016G00510 CS02472G00020 ... | 5 | ||
| Cucumis melo | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00006G07870 | 1 | |
| Tree-based ortholog | many-to-1 | CM00025G00720 | 1 | ||
| Eucalyptus grandis | Best-Hits-and-Inparalogs(BHI)family | many-to-many | EG0008G31840 EG0008G31850 | 2 | |
| Tree-based ortholog | many-to-1 | EG0002G15150 | 1 | ||
| Fragaria vesca | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV2G27730 | 1 | |
| Tree-based ortholog | many-to-many | FV4G13720 FV4G13700 FV2G27730 | 3 | ||
| Glycine max | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GM17G03130 | 1 | |
| Tree-based ortholog | many-to-many | GM19G42000 GM19G42010 GM03G39400 ... | 7 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ1G071850 | 1 | |
| Tree-based ortholog | many-to-many | LJ1G071840 LJ1G071850 LJ5G025680 ... | 5 | ||
| Malus domestica | Best-Hits-and-Inparalogs(BHI)family | many-to-many | MD17G001140 MD05G003810 | 2 | |
| Tree-based ortholog | many-to-many | MD00G062730 MD16G012230 MD00G039500 ... | 10 | ||
| Manihot esculenta | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ME01551G03750 | 1 | |
| Tree-based ortholog | many-to-many | ME03614G05180 ME03614G05140 | 2 | ||
| Medicago truncatula | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT4G120240 | 1 | |
| Tree-based ortholog | many-to-many | MT7G113050 MT7G113030 MT7G112615 ... | 12 | ||
| Oryza sativa ssp. japonica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS05G19150 | 1 | |
| Tree-based ortholog | many-to-1 | OS05G19150 | 1 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL04G02700 | 1 | |
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PP00010G00030 | 1 | |
| Tree-based ortholog | many-to-1 | PP00003G02600 | 1 | ||
| Populus trichocarpa | Best-Hits-and-Inparalogs(BHI)family | many-to-many | PT10G01080 PT00G13860 PT10G01090 ... | 6 | |
| Tree-based ortholog | many-to-many | PT05G02340 PT13G01350 | 2 | ||
| Prunus persica | Best-Hits-and-Inparalogs(BHI)family | many-to-many | PPE_001G11700 PPE_001G11670 PPE_001G11680 | 3 | |
| Tree-based ortholog | many-to-many | PPE_001G11680 PPE_001G11700 PPE_001G11670 | 3 | ||
| Ricinus communis | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC29726G01850 | 1 | |
| Tree-based ortholog | many-to-1 | RC30128G02440 | 1 | ||
| Solanum lycopersicum | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL06G009170 | 1 | |
| Tree-based ortholog | many-to-1 | SL01G099910 | 1 | ||
| Solanum tuberosum | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST06G007560 | 1 | |
| Tree-based ortholog | many-to-1 | ST01G037700 | 1 | ||
| Thellungiella parvula | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP7G14410 | 1 | |
| Tree-based ortholog | many-to-many | TP4G08750 TP3G04480 | 2 | ||
| Theobroma cacao | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0009G24940 | 1 | |
| Tree-based ortholog | many-to-1 | TC0009G24940 | 1 | ||
| Vitis vinifera | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV05G12490 | 1 | |
| Tree-based ortholog | many-to-1 | VV14G09020 | 1 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM03G08430 | 1 | |
| Tree-based ortholog | many-to-1 | ZM10G03520 | 1 |