Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
GR09G24590
(Gossypium raimondii)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Gossypium raimondii | Orthologous gene family | GR09G24590 | 1 |  |
| Anchor point | GR10G05040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | GR09G24590 | 1 | ||
| Tree-based ortholog | GR09G24590 GR10G05040 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00017G00740 | 1 | |
| Tree-based ortholog | many-to-1 | ATR_00017G00740 | 1 | ||
| Arabidopsis lyrata | Anchor point | 1-to-many | AL1G23080 AL2G26540 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL1G23080 | 1 | ||
| Tree-based ortholog | many-to-many | AL1G23080 AL2G26540 | 2 | ||
| Arabidopsis thaliana | Anchor point | 1-to-many | AT1G77580 AT1G21810 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT3G05270 | 1 | ||
| Tree-based ortholog | many-to-many | AT1G21810 AT1G77580 | 2 | ||
| Beta vulgaris | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G66910 | 1 | |
| Tree-based ortholog | many-to-1 | BV0G66910 | 1 | ||
| Brassica rapa | Anchor point | 1-to-1 | BR07G32530 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR05G35020 | 1 | ||
| Tree-based ortholog | many-to-1 | BR07G32530 | 1 | ||
| Capsella rubella | Anchor point | 1-to-many | CRU_002G23120 CRU_001G20370 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_003G04360 | 1 | ||
| Tree-based ortholog | many-to-many | CRU_001G20370 CRU_002G23120 | 2 | ||
| Carica papaya | Anchor point | 1-to-1 | CP00064G00860 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00064G00860 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00064G00860 | 1 | ||
| Citrullus lanatus | Anchor point | 1-to-1 | CL08G05640 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL08G05640 | 1 | ||
| Tree-based ortholog | many-to-1 | CL08G05640 | 1 | ||
| Citrus sinensis | Anchor point | 1-to-1 | CS00004G00750 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00166G00070 | 1 | ||
| Tree-based ortholog | many-to-1 | CS00004G00750 | 1 | ||
| Cucumis melo | Anchor point | 1-to-1 | CM01598G00350 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM01598G00350 | 1 | ||
| Tree-based ortholog | many-to-1 | CM01598G00350 | 1 | ||
| Eucalyptus grandis | Anchor point | 1-to-1 | EG0006G37210 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0006G37210 | 1 | ||
| Tree-based ortholog | many-to-1 | EG0006G37210 | 1 | ||
| Fragaria vesca | Anchor point | 1-to-1 | FV2G29450 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV2G29450 | 1 | ||
| Tree-based ortholog | many-to-1 | FV2G29450 | 1 | ||
| Glycine max | Anchor point | 1-to-many | GM13G03421 GM06G11901 GM04G42860 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM06G11901 GM04G42860 | 2 | ||
| Tree-based ortholog | many-to-many | GM04G42860 GM06G11901 GM14G23920 ... | 4 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ2G029390 | 1 | |
| Malus domestica | Anchor point | 1-to-1 | MD08G017140 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD00G220320 MD08G017140 | 2 | ||
| Tree-based ortholog | many-to-many | MD08G017140 MD00G220320 | 2 | ||
| Manihot esculenta | Anchor point | 1-to-many | ME06853G00020 ME07238G00220 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME07238G00220 | 1 | ||
| Tree-based ortholog | many-to-many | ME07238G00220 ME06853G00020 | 2 | ||
| Medicago truncatula | Anchor point | 1-to-many | MT8G094760 MT1G030010 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT1G030010 | 1 | ||
| Tree-based ortholog | many-to-1 | MT1G030010 | 1 | ||
| Oryza sativa ssp. japonica | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS11G06910 | 1 | |
| Tree-based ortholog | many-to-many | OS11G06910 OS12G07160 | 2 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00140G00270 PP00101G00590 PP00405G00190 ... | 8 | |
| Populus trichocarpa | Anchor point | 1-to-many | PT05G17810 PT05G07040 PT02G08340 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT05G17810 PT02G08340 | 2 | ||
| Tree-based ortholog | many-to-many | PT05G17810 PT02G08340 | 2 | ||
| Prunus persica | Anchor point | 1-to-1 | PPE_001G50030 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_001G50030 | 1 | ||
| Tree-based ortholog | many-to-1 | PPE_001G50030 | 1 | ||
| Ricinus communis | Anchor point | 1-to-1 | RC29908G00190 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29908G00190 | 1 | ||
| Tree-based ortholog | many-to-1 | RC29908G00190 | 1 | ||
| Solanum lycopersicum | Anchor point | 1-to-many | SL11G012860 SL06G060320 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL06G060320 | 1 | ||
| Tree-based ortholog | many-to-many | SL11G012860 SL06G060320 | 2 | ||
| Solanum tuberosum | Anchor point | 1-to-many | ST11G014740 ST06G019420 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST11G014740 | 1 | ||
| Tree-based ortholog | many-to-many | ST11G014740 ST10G011130 ST06G019420 | 3 | ||
| Thellungiella parvula | Anchor point | 1-to-many | TP5G32730 TP1G19370 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP5G32730 | 1 | ||
| Tree-based ortholog | many-to-1 | TP5G32730 | 1 | ||
| Theobroma cacao | Anchor point | 1-to-1 | TC0008G12160 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0008G12160 | 1 | ||
| Tree-based ortholog | many-to-1 | TC0008G12160 | 1 | ||
| Vitis vinifera | Anchor point | 1-to-1 | VV18G02090 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV07G07500 | 1 | ||
| Tree-based ortholog | many-to-1 | VV18G02090 | 1 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM02G36000 ZM07G22610 | 2 | |
| Tree-based ortholog | many-to-many | ZM02G36000 ZM07G22610 ZM04G33240 ... | 4 |