Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
GR04G24450
(Gossypium raimondii)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Gossypium raimondii | Orthologous gene family | GR04G24450 GR07G34340 | 2 |  |
| Anchor point | GR07G34340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | GR07G34340 GR04G24450 | 2 | ||
| Tree-based ortholog | GR07G34340 GR04G24450 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00004G00420 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00004G00420 | 1 | ||
| Tree-based ortholog | many-to-1 | ATR_00004G00420 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL3G03440 AL6G18190 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL3G03440 | 1 | ||
| Tree-based ortholog | many-to-many | AL6G18190 AL3G03440 | 2 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT3G03920 AT5G18180 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT3G03920 | 1 | ||
| Tree-based ortholog | many-to-many | AT5G18180 AT3G03920 | 2 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV3G06330 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV3G06330 | 1 | ||
| Tree-based ortholog | many-to-many | BV3G06330 BV0G73820 | 2 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR02G08920 BR03G07820 BR07G00770 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | BR07G00770 BR03G07820 | 2 | ||
| Tree-based ortholog | many-to-many | BR02G08920 BR03G07820 BR07G00770 ... | 4 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_003G03000 CRU_006G16060 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_003G03000 | 1 | ||
| Tree-based ortholog | many-to-many | CRU_006G16060 CRU_003G03000 | 2 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00051G01160 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00051G01160 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00051G01160 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR13G01460 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR13G01460 | 1 | ||
| Tree-based ortholog | many-to-1 | CR13G01460 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL04G05360 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL04G05360 | 1 | ||
| Tree-based ortholog | many-to-1 | CL04G05360 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00117G00340 | 1 | |
| Anchor point | 1-to-1 | CS00117G00340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00117G00340 | 1 | ||
| Tree-based ortholog | many-to-1 | CS00117G00340 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00010G00180 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00010G00180 | 1 | ||
| Tree-based ortholog | many-to-1 | CM00010G00180 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV1G29200 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV1G29200 | 1 | ||
| Tree-based ortholog | many-to-1 | FV1G29200 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM16G04570 GM19G28740 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GM16G04570 | 1 | ||
| Tree-based ortholog | many-to-many | GM16G04570 GM19G28740 | 2 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ1G054280 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ1G054280 | 1 | ||
| Tree-based ortholog | many-to-1 | LJ1G054280 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G359160 MD05G024530 MD10G004760 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | MD05G024530 MD00G359160 MD10G004760 | 3 | ||
| Tree-based ortholog | many-to-many | MD00G359160 MD05G024530 MD10G004760 | 3 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT7G085640 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT7G085640 | 1 | ||
| Tree-based ortholog | many-to-1 | MT7G085640 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS11G37080 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS11G37080 | 1 | ||
| Tree-based ortholog | many-to-1 | OS11G37080 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00129G00410 PP00229G00050 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00129G00410 PP00229G00050 | 2 | ||
| Tree-based ortholog | many-to-many | PP00229G00050 PP00129G00410 | 2 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT13G05840 PT19G03490 | 2 | |
| Anchor point | 1-to-1 | PT19G03490 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | PT19G03490 PT13G05840 | 2 | ||
| Tree-based ortholog | many-to-many | PT13G05840 PT19G03490 | 2 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC29950G00160 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC29950G00160 | 1 | ||
| Tree-based ortholog | many-to-1 | RC29950G00160 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL10G078540 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL10G078540 | 1 | ||
| Tree-based ortholog | many-to-1 | SL10G078540 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP3G02890 TP6G26140 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP3G02890 | 1 | ||
| Tree-based ortholog | many-to-many | TP6G26140 TP3G02890 | 2 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0005G29270 | 1 | |
| Anchor point | 1-to-1 | TC0005G29270 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0005G29270 | 1 | ||
| Tree-based ortholog | many-to-1 | TC0005G29270 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV08G08430 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV08G08430 | 1 | ||
| Tree-based ortholog | many-to-1 | VV08G08430 | 1 | ||
| Zea mays | Orthologous gene family | many-to-1 | ZM04G32740 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM04G32740 | 1 | ||
| Tree-based ortholog | many-to-many | ZM04G32740 ZM02G43730 ZM07G18460 | 3 |