Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
CS00064G00220
(Citrus sinensis)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Citrus sinensis | Orthologous gene family | CS00001G02320 CS00064G00220 | 2 |  |
| Tree-based ortholog | CS00064G00220 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | CS00064G00220 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00039G01780 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00039G01780 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00039G01780 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL4G17340 | 1 | |
| Tree-based ortholog | 1-to-1 | AL4G17340 | 1 | ||
| Anchor point | N/A | AL4G17340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL4G17340 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT2G32295 AT5G35730 | 2 | |
| Tree-based ortholog | 1-to-1 | AT2G32295 | 1 | ||
| Anchor point | N/A | AT2G32295 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT5G35730 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV0G53620 | 1 | |
| Tree-based ortholog | 1-to-1 | BV0G53620 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G53620 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR00G09500 BR03G16170 | 2 | |
| Tree-based ortholog | 1-to-1 | BR03G16170 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR00G09500 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_004G13250 CRU_007G30120 | 2 | |
| Tree-based ortholog | 1-to-1 | CRU_004G13250 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_007G30120 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00008G02310 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00008G02310 | 1 | ||
| Anchor point | N/A | CP00008G02310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00008G02310 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR01G05810 | 1 | |
| Tree-based ortholog | 1-to-1 | CR01G05810 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR01G05810 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL04G04090 | 1 | |
| Tree-based ortholog | 1-to-1 | CL04G04090 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL04G04090 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00036G00280 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00036G00280 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00036G00280 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0011G07230 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0011G07230 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0011G07230 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV1G16090 | 1 | |
| Tree-based ortholog | 1-to-1 | FV1G16090 | 1 | ||
| Anchor point | N/A | FV1G16090 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV1G16090 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM09G39960 GM12G32210 GM13G38260 ... | 4 | |
| Tree-based ortholog | 1-to-many | GM12G32210 GM13G38260 | 2 | ||
| Anchor point | N/A | GM12G32210 GM13G38260 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM12G32210 GM13G38260 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR02G01640 GR07G09480 GR08G11620 | 3 | |
| Tree-based ortholog | 1-to-1 | GR02G01640 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR02G01640 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ3G019330 | 1 | |
| Tree-based ortholog | 1-to-1 | LJ3G019330 | 1 | ||
| Anchor point | N/A | LJ3G019330 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ3G019330 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G382960 MD09G007380 MD17G008090 | 3 | |
| Tree-based ortholog | 1-to-many | MD00G382960 MD17G008090 MD09G007380 | 3 | ||
| Anchor point | N/A | MD09G007380 MD17G008090 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD17G008090 MD00G382960 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME12725G00030 ME12725G00040 | 2 | |
| Tree-based ortholog | 1-to-1 | ME12725G00030 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME12725G00040 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT2G088870 MT7G076560 | 2 | |
| Tree-based ortholog | 1-to-1 | MT2G088870 | 1 | ||
| Anchor point | N/A | MT2G088870 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT2G088870 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS12G40340 | 1 | |
| Tree-based ortholog | 1-to-1 | OS12G40340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS12G40340 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-many | OL14G01280 OL14G01980 | 2 | |
| Tree-based ortholog | 1-to-many | OL14G01980 OL14G01280 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | OL14G01980 OL14G01280 | 2 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00066G01290 PP00131G00520 | 2 | |
| Tree-based ortholog | 1-to-many | PP00131G00520 PP00066G01290 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00066G01290 PP00131G00520 | 2 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT07G12140 PT17G03900 | 2 | |
| Tree-based ortholog | 1-to-many | PT17G03900 PT07G12140 | 2 | ||
| Anchor point | N/A | PT17G03900 PT07G12140 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT17G03900 PT07G12140 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_002G15120 PPE_003G20030 | 2 | |
| Tree-based ortholog | 1-to-1 | PPE_003G20030 | 1 | ||
| Anchor point | N/A | PPE_003G20030 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_003G20030 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC30156G00400 | 1 | |
| Tree-based ortholog | 1-to-1 | RC30156G00400 | 1 | ||
| Anchor point | N/A | RC30156G00400 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30156G00400 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL04G080050 SL07G022830 | 2 | |
| Tree-based ortholog | 1-to-many | SL04G080050 SL07G022830 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL04G080050 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST04G033340 ST07G012070 | 2 | |
| Tree-based ortholog | 1-to-many | ST04G033340 ST07G012070 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST04G033340 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP4G14700 TP7G06520 | 2 | |
| Tree-based ortholog | 1-to-1 | TP4G14700 | 1 | ||
| Anchor point | N/A | TP4G14700 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP7G06520 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0001G36590 TC0002G15690 | 2 | |
| Tree-based ortholog | 1-to-1 | TC0002G15690 | 1 | ||
| Anchor point | N/A | TC0002G15690 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0002G15690 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV12G12420 | 1 | |
| Tree-based ortholog | 1-to-1 | VV12G12420 | 1 | ||
| Anchor point | N/A | VV12G12420 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV12G12420 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM01G28450 ZM03G15780 | 2 | |
| Tree-based ortholog | 1-to-many | ZM01G28450 ZM03G15780 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM03G15780 ZM01G28450 | 2 |