Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
CS00018G00940
(Citrus sinensis)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Citrus sinensis | Orthologous gene family | CS00018G00940 CS00539G00080 CS00539G00090 | 3 |  |
| Tree-based ortholog | CS00018G00940 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | CS00018G00940 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00030G01540 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00030G01540 | 1 | ||
| Anchor point | N/A | ATR_00030G01540 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00030G01540 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL6G02760 AL8G16690 | 2 | |
| Tree-based ortholog | 1-to-1 | AL8G16690 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL6G02760 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT5G03540 AT5G52340 AT5G52350 | 3 | |
| Tree-based ortholog | 1-to-1 | AT5G52340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT5G52340 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-many | BV0G26220 BV7G10890 | 2 | |
| Tree-based ortholog | 1-to-1 | BV7G10890 | 1 | ||
| Anchor point | N/A | BV7G10890 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G26220 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR02G16440 BR10G27880 | 2 | |
| Tree-based ortholog | 1-to-1 | BR02G16440 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR02G16440 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_006G02320 CRU_008G12240 | 2 | |
| Tree-based ortholog | 1-to-1 | CRU_008G12240 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_008G12240 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-many | CP00054G00140 CP00104G00340 | 2 | |
| Tree-based ortholog | 1-to-1 | CP00104G00340 | 1 | ||
| Anchor point | N/A | CP00104G00340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00104G00340 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR10G00900 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR10G00900 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-many | CL01G08890 CL05G22950 | 2 | |
| Tree-based ortholog | 1-to-1 | CL01G08890 | 1 | ||
| Anchor point | N/A | CL01G08890 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL01G08890 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00016G06790 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00016G06790 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00016G06790 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0001G21870 EG0010G02450 | 2 | |
| Tree-based ortholog | 1-to-1 | EG0001G21870 | 1 | ||
| Anchor point | N/A | EG0001G21870 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0001G21870 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-many | FV6G29360 FV7G15400 | 2 | |
| Tree-based ortholog | 1-to-1 | FV6G29360 | 1 | ||
| Anchor point | N/A | FV6G29360 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV6G29360 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM10G23810 GM10G34000 GM20G17500 ... | 4 | |
| Tree-based ortholog | 1-to-1 | GM13G05044 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM10G34000 GM20G33590 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR06G14990 GR11G22960 | 2 | |
| Tree-based ortholog | 1-to-1 | GR06G14990 | 1 | ||
| Anchor point | N/A | GR06G14990 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR06G14990 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-many | LJ5G029210 LJ5G029230 | 2 | |
| Tree-based ortholog | 1-to-1 | LJ5G029210 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ5G029210 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G097460 MD00G279850 MD00G284510 ... | 4 | |
| Tree-based ortholog | 1-to-many | MD00G279850 MD00G284510 | 2 | ||
| Anchor point | N/A | MD07G005120 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD00G279850 MD00G284510 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME04002G00110 ME06693G00020 ME11279G00380 | 3 | |
| Tree-based ortholog | 1-to-1 | ME11279G00380 | 1 | ||
| Anchor point | N/A | ME11279G00380 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME11279G00380 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT1G057560 MT1G090620 | 2 | |
| Tree-based ortholog | 1-to-1 | MT1G057560 | 1 | ||
| Anchor point | N/A | MT1G057560 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT1G057560 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS04G58880 OS11G05880 | 2 | |
| Tree-based ortholog | 1-to-many | OS04G58880 OS11G05880 | 2 | ||
| Anchor point | N/A | OS04G58870 OS11G05880 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS11G05880 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00036G00610 PP00039G00280 | 2 | |
| Tree-based ortholog | 1-to-many | PP00177G00690 PP00169G00210 PP00376G00390 ... | 10 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00039G00280 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT06G20390 PT08G01780 PT10G24180 ... | 4 | |
| Tree-based ortholog | 1-to-many | PT16G07100 PT06G20390 | 2 | ||
| Anchor point | N/A | PT06G20390 PT08G01780 PT10G24180 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT16G07100 PT06G20390 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_004G28330 PPE_007G11810 | 2 | |
| Tree-based ortholog | 1-to-1 | PPE_007G11810 | 1 | ||
| Anchor point | N/A | PPE_007G11810 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_007G11810 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-many | RC29439G00060 RC30184G00180 | 2 | |
| Tree-based ortholog | 1-to-1 | RC29439G00060 | 1 | ||
| Anchor point | N/A | RC29439G00060 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29439G00060 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL04G009740 SL10G081940 SL11G006620 | 3 | |
| Tree-based ortholog | 1-to-1 | SL10G081940 | 1 | ||
| Anchor point | N/A | SL11G006620 SL10G081940 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL04G009740 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST10G026170 ST11G011180 | 2 | |
| Tree-based ortholog | 1-to-1 | ST10G026170 | 1 | ||
| Anchor point | N/A | ST10G026170 ST11G011180 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST11G011180 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP6G14590 TP6G39210 | 2 | |
| Tree-based ortholog | 1-to-1 | TP6G14590 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP6G14590 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0005G10150 TC0010G11500 | 2 | |
| Tree-based ortholog | 1-to-1 | TC0005G10150 | 1 | ||
| Anchor point | N/A | TC0005G10150 TC0010G11500 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0005G10150 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | VV08G12840 VV13G11320 | 2 | |
| Tree-based ortholog | 1-to-1 | VV08G12840 | 1 | ||
| Anchor point | N/A | VV08G12840 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV08G12840 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM02G00020 ZM02G00030 | 2 | |
| Tree-based ortholog | 1-to-1 | ZM02G00030 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM02G00030 | 1 |