Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
CRU_006G10340
(Capsella rubella)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Capsella rubella | Orthologous gene family | CRU_006G10340 | 1 |  |
| Tree-based ortholog | CRU_006G10340 | 1 | ||
| Anchor point | CRU_006G17400 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | CRU_006G10340 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | 1-to-1 | ATR_00038G00760 | 1 | |
| Tree-based ortholog | 1-to-many | ATR_00038G00750 ATR_00038G00760 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00038G00760 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | 1-to-1 | AL6G11980 | 1 | |
| Tree-based ortholog | 1-to-1 | AL6G11980 | 1 | ||
| Anchor point | 1-to-many | AL6G11980 AL6G19790 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL6G11980 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | 1-to-1 | AT5G12110 | 1 | |
| Tree-based ortholog | 1-to-1 | AT5G12110 | 1 | ||
| Anchor point | 1-to-many | AT5G12110 AT5G19510 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT5G12110 | 1 | ||
| Beta vulgaris | Orthologous gene family | 1-to-1 | BV4G14430 | 1 | |
| Tree-based ortholog | 1-to-1 | BV4G14430 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV4G14430 | 1 | ||
| Brassica rapa | Orthologous gene family | 1-to-1 | BR10G21810 | 1 | |
| Tree-based ortholog | 1-to-1 | BR10G21810 | 1 | ||
| Anchor point | 1-to-many | BR02G09560 BR10G21810 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR10G21810 | 1 | ||
| Carica papaya | Orthologous gene family | 1-to-1 | CP00034G02040 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00034G02040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00034G02040 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | 1-to-1 | CL03G03600 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL03G03600 | 1 | ||
| Citrus sinensis | Tree-based ortholog | 1-to-1 | CS11656G00010 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00158G00280 | 1 | ||
| Cucumis melo | Tree-based ortholog | 1-to-many | CM00001G04550 CM00040G02570 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00001G04550 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-1 | EG0010G05770 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0010G05770 | 1 | ||
| Anchor point | 1-to-1 | EG0010G05770 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0010G05770 | 1 | ||
| Fragaria vesca | Orthologous gene family | 1-to-1 | FV4G16290 | 1 | |
| Tree-based ortholog | 1-to-1 | FV4G16290 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV4G16290 | 1 | ||
| Glycine max | Orthologous gene family | 1-to-many | GM02G44460 GM13G04050 GM14G04350 | 3 | |
| Tree-based ortholog | 1-to-many | GM13G04050 GM02G44460 GM14G04350 | 3 | ||
| Anchor point | 1-to-1 | GM14G04350 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM02G44460 GM14G04350 GM13G04050 | 3 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-many | GR09G07600 GR13G25520 | 2 | |
| Tree-based ortholog | 1-to-many | GR13G25520 GR09G07600 | 2 | ||
| Anchor point | 1-to-1 | GR13G25520 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GR13G25520 GR09G07600 | 2 | ||
| Lotus japonicus | Orthologous gene family | 1-to-1 | LJ6G011900 | 1 | |
| Tree-based ortholog | 1-to-many | LJ6G011900 LJ2G045590 | 2 | ||
| Anchor point | 1-to-1 | LJ2G045590 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ6G011900 | 1 | ||
| Malus domestica | Orthologous gene family | 1-to-many | MD00G214610 MD00G467640 MD00G467660 ... | 5 | |
| Tree-based ortholog | 1-to-many | MD00G464070 MD02G025740 MD02G025750 ... | 7 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD00G467660 MD07G002740 MD02G025750 ... | 6 | ||
| Manihot esculenta | Orthologous gene family | 1-to-1 | ME07991G00270 | 1 | |
| Tree-based ortholog | 1-to-1 | ME07991G00270 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME07991G00270 | 1 | ||
| Medicago truncatula | Orthologous gene family | 1-to-1 | MT5G088660 | 1 | |
| Tree-based ortholog | 1-to-1 | MT5G088660 | 1 | ||
| Anchor point | 1-to-1 | MT5G088660 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT5G088660 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | 1-to-1 | OS07G46750 | 1 | |
| Tree-based ortholog | 1-to-1 | OS07G46750 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS07G46750 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | 1-to-many | PP00070G00580 PP00333G00180 PP00145G00920 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00145G00920 | 1 | ||
| Populus trichocarpa | Orthologous gene family | 1-to-many | PT01G22470 PT09G01860 | 2 | |
| Tree-based ortholog | 1-to-many | PT01G22470 PT09G01860 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT01G22470 | 1 | ||
| Prunus persica | Orthologous gene family | 1-to-1 | PPE_005G00540 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_005G00540 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_005G00540 | 1 | ||
| Ricinus communis | Orthologous gene family | 1-to-1 | RC29785G00030 | 1 | |
| Tree-based ortholog | 1-to-1 | RC29785G00030 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29785G00030 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | 1-to-1 | SL11G072190 | 1 | |
| Tree-based ortholog | 1-to-1 | SL11G072190 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL11G072190 | 1 | ||
| Solanum tuberosum | Orthologous gene family | 1-to-1 | ST11G028900 | 1 | |
| Tree-based ortholog | 1-to-1 | ST11G028900 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST11G028900 | 1 | ||
| Thellungiella parvula | Orthologous gene family | 1-to-1 | TP6G24890 | 1 | |
| Tree-based ortholog | 1-to-1 | TP6G24890 | 1 | ||
| Anchor point | 1-to-1 | TP6G24890 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP6G24890 | 1 | ||
| Theobroma cacao | Orthologous gene family | 1-to-1 | TC0009G25280 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0009G25280 | 1 | ||
| Anchor point | 1-to-1 | TC0009G25280 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0009G25280 | 1 | ||
| Vitis vinifera | Orthologous gene family | 1-to-1 | VV06G11450 | 1 | |
| Tree-based ortholog | 1-to-1 | VV06G11450 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV06G11450 | 1 | ||
| Zea mays | Tree-based ortholog | 1-to-1 | ZM07G29540 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM07G27140 | 1 |