Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
CRU_001G19580
(Capsella rubella)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Capsella rubella | Orthologous gene family | CRU_001G19580 | 1 |  |
| Tree-based ortholog | CRU_001G19580 | 1 | ||
| Anchor point | CRU_002G22140 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | CRU_001G19580 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-many | ATR_00111G01310 ATR_00022G01120 | 2 | |
| Anchor point | 1-to-1 | ATR_00022G01120 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00022G01120 | 1 | ||
| Arabidopsis lyrata | Tree-based ortholog | 1-to-1 | AL1G22160 | 1 | |
| Anchor point | 1-to-many | AL2G25500 AL1G22160 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL1G22160 | 1 | ||
| Arabidopsis thaliana | Tree-based ortholog | 1-to-1 | AT1G20950 | 1 | |
| Anchor point | 1-to-many | AT1G76550 AT1G20950 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G20950 | 1 | ||
| Beta vulgaris | Tree-based ortholog | 1-to-1 | BV1G01740 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV1G01740 | 1 | ||
| Brassica rapa | Tree-based ortholog | 1-to-1 | BR06G15140 | 1 | |
| Anchor point | 1-to-many | BR08G24900 BR07G31830 BR06G15140 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR06G15140 | 1 | ||
| Carica papaya | Tree-based ortholog | 1-to-1 | CP24967G00050 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP24967G00050 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | 1-to-1 | CL11G13000 | 1 | |
| Anchor point | 1-to-1 | CL11G13000 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL11G13000 | 1 | ||
| Citrus sinensis | Tree-based ortholog | 1-to-1 | CS00002G07260 | 1 | |
| Anchor point | 1-to-1 | CS00002G07260 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00002G07260 | 1 | ||
| Cucumis melo | Tree-based ortholog | 1-to-1 | CM00029G04470 | 1 | |
| Anchor point | 1-to-1 | CM00029G04470 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00029G04470 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | 1-to-1 | EG0006G30750 | 1 | |
| Anchor point | 1-to-many | EG0006G14910 EG0006G30750 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0006G30750 | 1 | ||
| Fragaria vesca | Tree-based ortholog | 1-to-1 | FV5G28200 | 1 | |
| Anchor point | 1-to-1 | FV5G28200 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G28200 | 1 | ||
| Glycine max | Tree-based ortholog | 1-to-many | GM20G01010 GM07G20400 | 2 | |
| Anchor point | 1-to-1 | GM20G01010 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM20G01010 GM07G20400 | 2 | ||
| Gossypium raimondii | Tree-based ortholog | 1-to-1 | GR05G11560 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR05G11560 | 1 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ2G001790 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ2G001790 | 1 | ||
| Malus domestica | Tree-based ortholog | 1-to-many | MD00G482140 MD06G000330 | 2 | |
| Anchor point | 1-to-1 | MD06G000330 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD06G000330 | 1 | ||
| Manihot esculenta | Tree-based ortholog | 1-to-many | ME02943G01380 ME04047G00110 | 2 | |
| Anchor point | 1-to-many | ME02943G01380 ME04047G00110 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME04047G00110 | 1 | ||
| Medicago truncatula | Tree-based ortholog | 1-to-1 | MT1G035230 | 1 | |
| Anchor point | 1-to-1 | MT1G035230 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT1G035230 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | 1-to-many | OS08G25720 OS09G12650 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | OS02G48360 OS06G22060 | 2 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL04G00340 | 1 | |
| Physcomitrella patens | Tree-based ortholog | 1-to-many | PP00019G00910 PP00167G00130 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00019G00910 PP00167G00130 | 2 | ||
| Populus trichocarpa | Tree-based ortholog | 1-to-many | PT02G00310 PT05G25780 | 2 | |
| Anchor point | 1-to-many | PT02G00310 PT05G25780 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT05G25780 | 1 | ||
| Prunus persica | Tree-based ortholog | 1-to-1 | PPE_005G00370 | 1 | |
| Anchor point | 1-to-1 | PPE_005G00370 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_005G00370 | 1 | ||
| Ricinus communis | Tree-based ortholog | 1-to-1 | RC30170G07460 | 1 | |
| Anchor point | 1-to-1 | RC30170G07460 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30170G07460 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | 1-to-many | SL04G082880 SL12G095760 | 2 | |
| Anchor point | 1-to-many | SL04G082880 SL12G095760 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL12G095760 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | 1-to-many | ST04G036410 ST12G028110 | 2 | |
| Anchor point | 1-to-many | ST12G028110 ST04G036410 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST12G028110 | 1 | ||
| Thellungiella parvula | Tree-based ortholog | 1-to-1 | TP1G18650 | 1 | |
| Anchor point | 1-to-many | TP5G31710 TP1G18650 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G18650 | 1 | ||
| Theobroma cacao | Tree-based ortholog | 1-to-1 | TC0008G09470 | 1 | |
| Anchor point | 1-to-1 | TC0008G09470 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0008G09470 | 1 | ||
| Vitis vinifera | Tree-based ortholog | 1-to-1 | VV18G12910 | 1 | |
| Anchor point | 1-to-many | VV18G12910 VV12G11300 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV18G12910 | 1 | ||
| Zea mays | Tree-based ortholog | 1-to-many | ZM01G39800 ZM07G10730 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM05G38410 ZM04G22620 | 2 |