Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
CRU_001G02110
(Capsella rubella)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Capsella rubella | Orthologous gene family | CRU_001G02110 CRU_006G33070 | 2 |  |
| Tree-based ortholog | CRU_006G33070 CRU_001G02110 | 2 | ||
| Anchor point | CRU_006G33070 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | CRU_001G02110 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00103G00180 | 1 | |
| Tree-based ortholog | many-to-1 | ATR_00103G00180 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00103G00180 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL6G38470 | 1 | |
| Tree-based ortholog | many-to-1 | AL6G38470 | 1 | ||
| Anchor point | 1-to-1 | AL6G38470 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL6G38470 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT1G03130 AT4G02770 | 2 | |
| Tree-based ortholog | many-to-1 | AT4G02770 | 1 | ||
| Anchor point | 1-to-many | AT4G02770 AT1G03130 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G03130 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV6G06400 | 1 | |
| Tree-based ortholog | many-to-1 | BV6G06400 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV6G06400 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-1 | BR09G00150 | 1 | |
| Tree-based ortholog | many-to-1 | BR09G00150 | 1 | ||
| Anchor point | 1-to-1 | BR09G00150 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR09G00150 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR05G03940 | 1 | |
| Tree-based ortholog | many-to-1 | CR05G03940 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR05G03940 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL05G05790 | 1 | |
| Tree-based ortholog | many-to-1 | CL05G05790 | 1 | ||
| Anchor point | 1-to-1 | CL05G05790 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL05G05790 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00011G01020 | 1 | |
| Tree-based ortholog | many-to-1 | CS00011G01020 | 1 | ||
| Anchor point | 1-to-1 | CS00022G01290 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00011G01020 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00006G06430 | 1 | |
| Tree-based ortholog | many-to-1 | CM00006G06430 | 1 | ||
| Anchor point | 1-to-1 | CM00006G06430 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00006G06430 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0002G08980 | 1 | |
| Tree-based ortholog | many-to-many | EG0002G08980 EG0008G28600 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0002G08980 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV4G14360 | 1 | |
| Tree-based ortholog | many-to-1 | FV4G14360 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV4G14360 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM10G39460 GM20G28300 | 2 | |
| Tree-based ortholog | many-to-many | GM10G39460 GM20G28300 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM20G28300 GM10G39460 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR04G07920 GR05G04200 GR08G00410 | 3 | |
| Tree-based ortholog | many-to-many | GR04G07920 GR08G00410 GR05G04200 | 3 | ||
| Anchor point | 1-to-many | GR04G07920 GR08G00410 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GR04G07920 GR08G00410 | 2 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ5G035210 | 1 | |
| Tree-based ortholog | many-to-1 | LJ5G035210 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ5G035210 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD07G020860 MD16G014080 | 2 | |
| Tree-based ortholog | many-to-many | MD16G014080 MD07G020860 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD07G020860 MD16G014080 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME01551G02220 ME06916G01630 | 2 | |
| Tree-based ortholog | many-to-many | ME01551G02220 ME06916G01630 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME06916G01630 ME01551G02220 | 2 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT5G006130 | 1 | |
| Tree-based ortholog | many-to-many | MT5G006130 MT1G104630 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT5G006130 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS08G44680 | 1 | |
| Tree-based ortholog | many-to-1 | OS08G44680 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS08G44680 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL14G03430 | 1 | |
| Tree-based ortholog | many-to-1 | OL14G03430 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL14G03430 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00001G03510 PP00004G01240 PP00077G00360 ... | 4 | |
| Tree-based ortholog | many-to-many | PP00001G03510 PP00107G00840 PP00077G00360 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00077G00360 PP00004G01240 PP00107G00840 ... | 4 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT08G15160 PT10G08940 | 2 | |
| Tree-based ortholog | many-to-many | PT10G08940 PT08G15160 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT10G08940 PT08G15160 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_001G01140 | 1 | |
| Tree-based ortholog | many-to-1 | PPE_001G01140 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_001G01140 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-many | RC29647G00760 RC29726G00040 | 2 | |
| Tree-based ortholog | many-to-many | RC29726G00040 RC29647G00760 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29726G00040 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL06G054260 | 1 | |
| Tree-based ortholog | many-to-1 | SL06G054260 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL06G054260 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST06G018020 | 1 | |
| Tree-based ortholog | many-to-1 | ST06G018020 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST06G018020 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP1G02150 TP6G02800 | 2 | |
| Tree-based ortholog | many-to-1 | TP6G02800 | 1 | ||
| Anchor point | 1-to-many | TP1G02150 TP6G02800 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G02150 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0001G27580 TC0004G23180 | 2 | |
| Tree-based ortholog | many-to-many | TC0001G27580 TC0004G23180 | 2 | ||
| Anchor point | 1-to-1 | TC0001G27580 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0001G27580 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV07G01970 | 1 | |
| Tree-based ortholog | many-to-1 | VV07G01970 | 1 | ||
| Anchor point | 1-to-1 | VV07G01970 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV07G01970 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM01G56970 ZM05G02210 | 2 | |
| Tree-based ortholog | many-to-many | ZM05G02210 ZM01G56970 | 2 | ||
| Anchor point | 1-to-many | ZM01G56970 ZM05G02210 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM05G02210 ZM01G56970 | 2 |