Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
BR10G25470
(Brassica rapa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Brassica rapa | Orthologous gene family | BR10G25470 | 1 |  |
| Tree-based ortholog | BR10G25470 | 1 | ||
| Anchor point | BR03G02700 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | BR10G25470 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-1 | ATR_00069G00620 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00069G00620 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | 1-to-1 | AL6G06990 | 1 | |
| Tree-based ortholog | 1-to-1 | AL6G06990 | 1 | ||
| Anchor point | 1-to-1 | AL8G28360 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL6G06990 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | 1-to-1 | AT5G07240 | 1 | |
| Tree-based ortholog | 1-to-1 | AT5G07240 | 1 | ||
| Anchor point | 1-to-many | AT5G62070 AT5G07240 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT5G07240 | 1 | ||
| Beta vulgaris | Orthologous gene family | 1-to-1 | BV0G31100 | 1 | |
| Tree-based ortholog | 1-to-1 | BV0G31100 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G31100 | 1 | ||
| Capsella rubella | Orthologous gene family | 1-to-1 | CRU_006G06090 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_006G06090 | 1 | ||
| Anchor point | 1-to-many | CRU_006G06090 CRU_008G22130 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_006G06090 | 1 | ||
| Carica papaya | Orthologous gene family | 1-to-1 | CP00107G00210 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00107G00210 | 1 | ||
| Anchor point | 1-to-1 | CP00107G00210 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00107G00210 | 1 | ||
| Citrullus lanatus | Orthologous gene family | 1-to-1 | CL05G09040 | 1 | |
| Tree-based ortholog | 1-to-1 | CL05G09040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL05G09040 | 1 | ||
| Citrus sinensis | Orthologous gene family | 1-to-1 | CS00062G00400 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00062G00400 | 1 | ||
| Anchor point | 1-to-1 | CS00062G00400 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00062G00400 | 1 | ||
| Cucumis melo | Orthologous gene family | 1-to-1 | CM00006G10000 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00006G10000 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00006G10000 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-1 | EG0001G23860 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0005G04840 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0001G23860 | 1 | ||
| Fragaria vesca | Tree-based ortholog | 1-to-1 | FV5G01980 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G01980 | 1 | ||
| Glycine max | Orthologous gene family | 1-to-many | GM09G26630 GM16G32161 | 2 | |
| Tree-based ortholog | 1-to-many | GM16G32161 GM09G26630 GM20G29550 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM09G26630 GM16G32161 | 2 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-1 | GR04G12100 | 1 | |
| Tree-based ortholog | 1-to-1 | GR04G12100 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR04G12100 | 1 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ2G035810 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ5G034640 | 1 | ||
| Malus domestica | Orthologous gene family | 1-to-many | MD01G018860 MD07G018150 | 2 | |
| Tree-based ortholog | 1-to-many | MD01G018860 MD07G018150 | 2 | ||
| Anchor point | 1-to-many | MD01G006480 MD07G018150 MD01G018860 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD07G018150 MD01G018860 | 2 | ||
| Manihot esculenta | Orthologous gene family | 1-to-1 | ME11425G00340 | 1 | |
| Tree-based ortholog | 1-to-1 | ME11425G00340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME11425G00340 | 1 | ||
| Medicago truncatula | Orthologous gene family | 1-to-1 | MT00G20820 | 1 | |
| Tree-based ortholog | 1-to-many | MT00G20820 MT1G101330 | 2 | ||
| Anchor point | 1-to-1 | MT1G101330 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT1G101330 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | 1-to-1 | OS04G48160 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS04G48160 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | 1-to-many | PP00372G00060 PP00287G00200 PP00060G00500 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00244G00090 PP00234G00290 PP00007G00770 ... | 5 | ||
| Populus trichocarpa | Orthologous gene family | 1-to-many | PT12G13980 PT15G14220 | 2 | |
| Tree-based ortholog | 1-to-many | PT12G13980 PT15G14220 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT15G14220 PT12G13980 | 2 | ||
| Prunus persica | Orthologous gene family | 1-to-1 | PPE_002G27850 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_002G27850 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_005G10140 | 1 | ||
| Ricinus communis | Orthologous gene family | 1-to-1 | RC30147G00480 | 1 | |
| Tree-based ortholog | 1-to-1 | RC30147G00480 | 1 | ||
| Anchor point | 1-to-1 | RC30147G00480 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30147G00480 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | 1-to-1 | SL03G026110 | 1 | |
| Tree-based ortholog | 1-to-many | SL08G007920 SL08G080470 SL03G026110 | 3 | ||
| Anchor point | 1-to-many | SL10G079240 SL03G026110 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL03G026110 | 1 | ||
| Solanum tuberosum | Orthologous gene family | 1-to-1 | ST03G014830 | 1 | |
| Tree-based ortholog | 1-to-many | ST08G009940 ST08G026520 ST03G014830 | 3 | ||
| Anchor point | 1-to-1 | ST03G014830 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST03G014830 | 1 | ||
| Thellungiella parvula | Orthologous gene family | 1-to-many | TP2G25240 TP6G35650 | 2 | |
| Tree-based ortholog | 1-to-1 | TP6G35650 | 1 | ||
| Anchor point | 1-to-many | TP2G25240 TP6G35650 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP6G35650 | 1 | ||
| Theobroma cacao | Orthologous gene family | 1-to-1 | TC0003G17330 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0003G17330 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0003G17330 | 1 | ||
| Vitis vinifera | Orthologous gene family | 1-to-1 | VV16G00520 | 1 | |
| Tree-based ortholog | 1-to-1 | VV16G00520 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV02G07000 | 1 | ||
| Zea mays | Tree-based ortholog | 1-to-1 | ZM10G22080 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM01G44190 | 1 |