Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
BR09G43370
(Brassica rapa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Brassica rapa | Orthologous gene family | BR02G01780 BR03G04190 BR03G04200 ... | 7 |  |
| Tree-based ortholog | BR09G43370 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | BR09G43370 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-many | ATR_00064G00640 ATR_00065G02090 | 2 | |
| Tree-based ortholog | 1-to-1 | ATR_00065G02090 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00065G02090 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL1G49650 AL3G14370 AL4G04120 ... | 5 | |
| Tree-based ortholog | 1-to-1 | AL4G04120 | 1 | ||
| Anchor point | N/A | AL4G04120 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL4G04120 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT1G55130 AT2G24170 AT3G13772 ... | 5 | |
| Tree-based ortholog | 1-to-1 | AT2G24170 | 1 | ||
| Anchor point | N/A | AT2G24170 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT2G24170 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-many | BV0G01030 BV0G01040 BV0G76360 ... | 4 | |
| Tree-based ortholog | 1-to-many | BV0G76360 BV2G13290 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | BV0G01040 BV0G01030 | 2 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_001G41540 CRU_003G12700 CRU_004G03330 ... | 5 | |
| Tree-based ortholog | 1-to-1 | CRU_004G03330 | 1 | ||
| Anchor point | N/A | CRU_004G03330 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_004G03330 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-many | CP00025G00560 CP00046G01640 CP00127G00350 | 3 | |
| Tree-based ortholog | 1-to-1 | CP00046G01640 | 1 | ||
| Anchor point | N/A | CP00046G01640 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00127G00350 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR10G04820 | 1 | |
| Tree-based ortholog | 1-to-1 | CR10G04820 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR10G04820 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-many | CL05G17440 CL06G13000 CL09G00330 | 3 | |
| Tree-based ortholog | 1-to-many | CL05G17460 CL06G13000 | 2 | ||
| Anchor point | N/A | CL06G13000 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL05G17440 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-many | CS00025G01380 CS00032G01180 CS00068G00760 | 3 | |
| Tree-based ortholog | 1-to-1 | CS00068G00760 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00025G01380 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-many | CM00012G02420 CM00029G03360 CM00029G03370 ... | 4 | |
| Tree-based ortholog | 1-to-1 | CM00012G02420 | 1 | ||
| Anchor point | N/A | CM00012G02420 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00029G03360 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0003G02760 EG0003G20470 EG0006G26380 | 3 | |
| Tree-based ortholog | 1-to-1 | EG0003G02760 | 1 | ||
| Anchor point | N/A | EG0003G02760 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0003G20470 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-many | FV1G01740 FV1G08930 FV1G08940 ... | 7 | |
| Tree-based ortholog | 1-to-1 | FV1G01740 | 1 | ||
| Anchor point | N/A | FV1G01740 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV1G01740 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM02G36551 GM04G06420 GM06G06460 ... | 9 | |
| Tree-based ortholog | 1-to-many | GM06G28090 GM02G36551 GM17G08130 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM17G34020 GM14G11780 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR09G05690 GR09G06300 GR09G14090 ... | 9 | |
| Tree-based ortholog | 1-to-many | GR10G11330 GR13G21590 GR09G05690 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR09G05690 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-many | LJ1G025880 LJ3G037760 LJ4G033350 ... | 4 | |
| Tree-based ortholog | 1-to-many | LJ6G013390 LJ4G033350 | 2 | ||
| Anchor point | N/A | LJ6G013390 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ1G025880 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G387660 MD00G392500 MD01G020040 ... | 7 | |
| Tree-based ortholog | 1-to-1 | MD00G392500 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD08G006320 MD01G020040 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME00847G02330 ME01934G00040 ME02022G00060 ... | 7 | |
| Tree-based ortholog | 1-to-many | ME02022G00060 ME01934G00040 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME01934G00040 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT1G014080 MT3G105950 MT8G016270 | 3 | |
| Tree-based ortholog | 1-to-many | MT3G105950 MT1G014080 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT1G014080 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS06G37160 OS06G44140 OS09G38530 | 3 | |
| Tree-based ortholog | 1-to-many | OS06G44140 OS09G38530 OS08G44150 | 3 | ||
| Anchor point | N/A | OS09G38530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS09G38530 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL01G03610 | 1 | |
| Tree-based ortholog | 1-to-many | OL20G02940 OL01G03610 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL01G03610 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00024G00730 PP00073G00470 PP00083G00560 ... | 5 | |
| Tree-based ortholog | 1-to-many | PP00137G00610 PP00073G00470 PP00083G00560 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00137G00610 PP00073G00470 PP00024G00730 ... | 4 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT03G03870 PT06G18420 PT06G26450 ... | 5 | |
| Tree-based ortholog | 1-to-many | PT06G18420 PT18G10660 | 2 | ||
| Anchor point | N/A | PT06G18420 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT06G18420 PT18G10660 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_001G40070 PPE_003G03630 PPE_007G27930 | 3 | |
| Tree-based ortholog | 1-to-1 | PPE_007G27930 | 1 | ||
| Anchor point | N/A | PPE_007G27930 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_001G40070 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-many | RC28694G00160 RC29687G00090 RC29848G00900 | 3 | |
| Tree-based ortholog | 1-to-1 | RC29687G00090 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29687G00090 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL03G121570 SL05G018870 SL06G062590 ... | 6 | |
| Tree-based ortholog | 1-to-1 | SL07G005600 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL07G005600 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST03G035380 ST05G017980 ST06G021670 ... | 6 | |
| Tree-based ortholog | 1-to-1 | ST07G006460 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST07G006460 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP1G40790 TP2G22430 TP3G11970 ... | 5 | |
| Tree-based ortholog | 1-to-1 | TP4G03110 | 1 | ||
| Anchor point | N/A | TP4G03110 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP4G03110 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0006G11120 TC0009G01490 TC0009G02880 | 3 | |
| Tree-based ortholog | 1-to-1 | TC0009G02880 | 1 | ||
| Anchor point | N/A | TC0009G02880 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0009G02880 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | VV04G13150 VV09G03170 | 2 | |
| Tree-based ortholog | 1-to-1 | VV11G07230 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV04G13150 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM01G36690 ZM01G36700 ZM02G34910 ... | 10 | |
| Tree-based ortholog | 1-to-many | ZM09G15910 ZM06G12520 ZM01G36690 ... | 8 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM10G06840 | 1 |