Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
BR09G40100
(Brassica rapa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Brassica rapa | Orthologous gene family | BR09G40100 | 1 |  |
| Tree-based ortholog | BR09G40100 | 1 | ||
| Anchor point | BR07G16610 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | BR09G40100 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-1 | ATR_00106G00940 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00106G00940 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | 1-to-1 | AL5G31270 | 1 | |
| Tree-based ortholog | 1-to-1 | AL5G31270 | 1 | ||
| Anchor point | 1-to-many | AL5G31270 AL4G32930 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL5G31270 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | 1-to-1 | AT3G60550 | 1 | |
| Tree-based ortholog | 1-to-1 | AT3G60550 | 1 | ||
| Anchor point | 1-to-many | AT2G45080 AT3G60550 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT3G60550 | 1 | ||
| Beta vulgaris | Tree-based ortholog | 1-to-1 | BV0G64910 | 1 | |
| Anchor point | 1-to-1 | BV0G64910 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G64910 | 1 | ||
| Capsella rubella | Orthologous gene family | 1-to-1 | CRU_005G25890 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_005G25890 | 1 | ||
| Anchor point | 1-to-many | CRU_004G26700 CRU_005G25890 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_005G25890 | 1 | ||
| Carica papaya | Tree-based ortholog | 1-to-1 | CP00212G00050 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00212G00050 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR02G11190 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR02G11190 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | 1-to-1 | CL06G02750 | 1 | |
| Anchor point | 1-to-1 | CL05G02870 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL06G02750 | 1 | ||
| Citrus sinensis | Tree-based ortholog | 1-to-1 | CS00001G01230 | 1 | |
| Anchor point | 1-to-1 | CS00001G01230 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00001G01230 | 1 | ||
| Cucumis melo | Tree-based ortholog | 1-to-1 | CM00052G00030 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00052G00030 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | 1-to-1 | EG0005G13200 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0005G13200 | 1 | ||
| Fragaria vesca | Tree-based ortholog | 1-to-1 | FV7G12230 | 1 | |
| Anchor point | 1-to-1 | FV7G12230 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV7G12230 | 1 | ||
| Glycine max | Tree-based ortholog | 1-to-many | GM03G03990 GM01G32920 | 2 | |
| Anchor point | 1-to-1 | GM01G32920 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM01G32920 GM03G03990 | 2 | ||
| Gossypium raimondii | Tree-based ortholog | 1-to-many | GR07G08840 GR08G10680 GR04G16440 | 3 | |
| Anchor point | 1-to-many | GR04G16440 GR08G10680 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR07G08840 | 1 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ3G019340 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ1G036340 | 1 | ||
| Malus domestica | Tree-based ortholog | 1-to-1 | MD07G008330 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD07G008330 | 1 | ||
| Manihot esculenta | Tree-based ortholog | 1-to-many | ME04450G00220 ME08265G04860 | 2 | |
| Anchor point | 1-to-many | ME08265G04860 ME04450G00220 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME08265G04860 | 1 | ||
| Medicago truncatula | Tree-based ortholog | 1-to-1 | MT4G028060 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT4G028060 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | 1-to-1 | OS04G46660 | 1 | |
| Anchor point | 1-to-1 | OS04G46660 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS04G46660 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | 1-to-many | PP00008G01630 PP00387G00290 PP00044G00530 ... | 5 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00062G00520 PP00387G00290 PP00044G00530 ... | 5 | ||
| Populus trichocarpa | Tree-based ortholog | 1-to-many | PT14G06640 PT02G14340 | 2 | |
| Anchor point | 1-to-1 | PT02G14340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT14G06640 PT02G14340 | 2 | ||
| Prunus persica | Tree-based ortholog | 1-to-1 | PPE_002G13380 | 1 | |
| Anchor point | 1-to-1 | PPE_002G13380 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_002G13380 | 1 | ||
| Ricinus communis | Tree-based ortholog | 1-to-1 | RC30174G00710 | 1 | |
| Anchor point | 1-to-1 | RC30174G00710 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30174G00710 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | 1-to-1 | SL01G090800 | 1 | |
| Anchor point | 1-to-1 | SL01G090800 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL01G090800 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | 1-to-1 | ST01G029950 | 1 | |
| Anchor point | 1-to-1 | ST01G029950 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST01G029950 | 1 | ||
| Thellungiella parvula | Orthologous gene family | 1-to-1 | TP5G02670 | 1 | |
| Tree-based ortholog | 1-to-1 | TP5G02670 | 1 | ||
| Anchor point | 1-to-many | TP4G27140 TP5G02670 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP5G02670 | 1 | ||
| Theobroma cacao | Tree-based ortholog | 1-to-1 | TC0001G38070 | 1 | |
| Anchor point | 1-to-1 | TC0001G38070 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0001G38070 | 1 | ||
| Vitis vinifera | Tree-based ortholog | 1-to-1 | VV15G00410 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV15G00410 | 1 | ||
| Zea mays | Tree-based ortholog | 1-to-1 | ZM02G07620 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM02G07620 | 1 |