Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
BR09G20390
(Brassica rapa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Brassica rapa | Orthologous gene family | BR09G20390 | 1 |  |
| Tree-based ortholog | BR09G20390 BR06G38880 | 2 | ||
| Anchor point | BR06G38880 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | BR09G20390 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | many-to-many | ATR_00004G00490 ATR_00060G01150 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00060G01150 | 1 | ||
| Arabidopsis lyrata | Tree-based ortholog | many-to-1 | AL6G30830 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL6G30830 | 1 | ||
| Arabidopsis thaliana | Tree-based ortholog | many-to-many | AT5G43090 AT5G43110 | 2 | |
| Anchor point | 1-to-1 | AT5G43090 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | AT5G43110 AT5G43090 | 2 | ||
| Beta vulgaris | Tree-based ortholog | many-to-1 | BV9G19370 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV1G11060 | 1 | ||
| Capsella rubella | Tree-based ortholog | many-to-1 | CRU_008G05490 | 1 | |
| Anchor point | 1-to-1 | CRU_008G05490 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_008G05490 | 1 | ||
| Carica papaya | Tree-based ortholog | many-to-1 | CP00292G00050 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00036G01240 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | many-to-1 | CR12G16260 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR12G16260 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | many-to-many | CL03G14280 CL03G14270 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL03G14270 | 1 | ||
| Citrus sinensis | Tree-based ortholog | many-to-1 | CS00004G04450 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00004G04450 | 1 | ||
| Cucumis melo | Tree-based ortholog | many-to-many | CM00025G03700 CM00025G03710 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00025G03710 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | many-to-1 | EG0006G18610 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0002G29980 | 1 | ||
| Fragaria vesca | Tree-based ortholog | many-to-1 | FV2G31170 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV2G31170 | 1 | ||
| Glycine max | Tree-based ortholog | many-to-1 | GM06G04731 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GM06G04731 | 1 | ||
| Gossypium raimondii | Tree-based ortholog | many-to-many | GR05G10030 GR09G21720 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR09G21720 | 1 | ||
| Lotus japonicus | Tree-based ortholog | many-to-1 | LJ1G023490 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ1G023490 | 1 | ||
| Malus domestica | Tree-based ortholog | many-to-many | MD08G010290 MD15G002260 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD11G000220 | 1 | ||
| Manihot esculenta | Tree-based ortholog | many-to-1 | ME03237G00490 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME03237G00490 | 1 | ||
| Medicago truncatula | Tree-based ortholog | many-to-1 | MT3G102650 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT3G102650 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | many-to-many | OS12G30520 OS11G37090 OS12G31000 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | OS12G30520 OS11G37090 | 2 | ||
| Ostreococcus lucimarinus | Tree-based ortholog | many-to-1 | OL14G02710 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL14G02710 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | many-to-many | PP00014G01480 PP00041G01420 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00041G01420 PP00014G01480 | 2 | ||
| Populus trichocarpa | Tree-based ortholog | many-to-many | PT02G12090 PT14G02030 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT14G02030 PT02G12090 | 2 | ||
| Prunus persica | Tree-based ortholog | many-to-1 | PPE_001G43130 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_001G43130 | 1 | ||
| Ricinus communis | Tree-based ortholog | many-to-1 | RC30170G01360 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC28842G00320 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | many-to-1 | SL04G078210 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL01G028800 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | many-to-1 | ST04G031190 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST01G015250 | 1 | ||
| Thellungiella parvula | Tree-based ortholog | many-to-1 | TP2G07870 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP2G07870 | 1 | ||
| Theobroma cacao | Tree-based ortholog | many-to-1 | TC0008G08990 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0008G08990 | 1 | ||
| Vitis vinifera | Tree-based ortholog | many-to-many | VV06G07810 VV08G08400 VV00G00020 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV08G08400 | 1 | ||
| Zea mays | Tree-based ortholog | many-to-many | ZM10G03490 ZM04G32750 ZM10G04410 ... | 5 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM04G32750 | 1 |