Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
BR07G07260
(Brassica rapa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Brassica rapa | Orthologous gene family | BR07G07260 | 1 |  |
| Tree-based ortholog | BR08G22240 BR07G07260 | 2 | ||
| Anchor point | BR08G22240 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | BR07G07260 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | many-to-1 | ATR_00022G01080 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00022G01080 | 1 | ||
| Arabidopsis lyrata | Tree-based ortholog | many-to-1 | AL1G28850 | 1 | |
| Anchor point | 1-to-1 | AL1G28850 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL1G28850 | 1 | ||
| Arabidopsis thaliana | Tree-based ortholog | many-to-1 | AT1G27650 | 1 | |
| Anchor point | 1-to-1 | AT1G27650 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G27650 | 1 | ||
| Beta vulgaris | Tree-based ortholog | many-to-1 | BV7G11250 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV7G11250 | 1 | ||
| Capsella rubella | Tree-based ortholog | many-to-1 | CRU_001G25100 | 1 | |
| Anchor point | 1-to-1 | CRU_001G25100 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_001G25100 | 1 | ||
| Carica papaya | Tree-based ortholog | many-to-1 | CP24967G00070 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP24967G00070 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | many-to-1 | CR06G00480 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR06G00480 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | many-to-1 | CL11G13020 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL11G13020 | 1 | ||
| Citrus sinensis | Tree-based ortholog | many-to-1 | CS00002G07280 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00002G07280 | 1 | ||
| Cucumis melo | Tree-based ortholog | many-to-1 | CM00029G04490 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00004G01360 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | many-to-1 | EG0006G30770 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0006G30770 | 1 | ||
| Fragaria vesca | Tree-based ortholog | many-to-1 | FV5G28110 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV6G19250 | 1 | ||
| Glycine max | Tree-based ortholog | many-to-many | GM07G20090 GM20G00950 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM03G34840 GM19G37530 | 2 | ||
| Gossypium raimondii | Tree-based ortholog | many-to-1 | GR04G07530 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR04G21870 | 1 | ||
| Lotus japonicus | Tree-based ortholog | many-to-many | LJ1G066150 LJ3G043090 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ3G043090 | 1 | ||
| Malus domestica | Tree-based ortholog | many-to-1 | MD06G000310 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD12G001670 | 1 | ||
| Manihot esculenta | Tree-based ortholog | many-to-1 | ME04047G00120 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME04047G00120 | 1 | ||
| Medicago truncatula | Tree-based ortholog | many-to-1 | MT1G035130 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT2G084715 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | many-to-many | OS09G31482 OS05G48960 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS09G31482 | 1 | ||
| Ostreococcus lucimarinus | Tree-based ortholog | many-to-1 | OL15G00920 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL15G00920 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | many-to-1 | PP00333G00210 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00015G00050 PP00215G00350 | 2 | ||
| Populus trichocarpa | Tree-based ortholog | many-to-1 | PT05G25800 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT05G25800 | 1 | ||
| Prunus persica | Tree-based ortholog | many-to-many | PPE_001G53150 PPE_007G14070 PPE_006G11600 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_007G14070 | 1 | ||
| Ricinus communis | Tree-based ortholog | many-to-1 | RC30170G07490 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30170G07490 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | many-to-many | SL01G103090 SL10G083640 SL11G066830 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL11G066830 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | many-to-many | ST12G016910 ST01G040080 ST10G025510 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST11G024640 | 1 | ||
| Thellungiella parvula | Tree-based ortholog | many-to-1 | TP1G23860 | 1 | |
| Anchor point | 1-to-1 | TP1G23860 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G23860 | 1 | ||
| Theobroma cacao | Tree-based ortholog | many-to-1 | TC0001G26630 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | TC0009G28760 TC0009G28750 | 2 | ||
| Vitis vinifera | Tree-based ortholog | many-to-many | VV12G06470 VV08G11410 VV18G12930 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV08G11410 | 1 | ||
| Zea mays | Tree-based ortholog | many-to-many | ZM07G18020 ZM08G10580 ZM06G31160 ... | 5 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM06G31160 ZM02G46060 ZM08G10580 | 3 |