Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
BR03G10150
(Brassica rapa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Brassica rapa | Orthologous gene family | BR03G10150 BR06G18850 | 2 |  |
| Tree-based ortholog | BR03G10150 BR08G09720 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | BR03G10150 BR03G10130 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00023G02120 | 1 | |
| Tree-based ortholog | many-to-1 | ATR_00023G02120 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00023G02120 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL5G13780 | 1 | |
| Tree-based ortholog | many-to-1 | AL8G26410 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL8G26410 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT2G28540 AT3G45630 AT5G60170 | 3 | |
| Tree-based ortholog | many-to-1 | AT5G60170 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT5G60170 | 1 | ||
| Beta vulgaris | Tree-based ortholog | many-to-1 | BV9G05880 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV9G05880 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_004G09300 CRU_005G10770 | 2 | |
| Tree-based ortholog | many-to-1 | CRU_008G20300 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_008G20300 | 1 | ||
| Carica papaya | Tree-based ortholog | many-to-1 | CP00139G00440 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00139G00440 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | many-to-1 | CL02G20900 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL02G20900 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00115G00020 | 1 | |
| Tree-based ortholog | many-to-1 | CS00014G01550 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00014G01550 | 1 | ||
| Cucumis melo | Tree-based ortholog | many-to-1 | CM00082G00480 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00082G00480 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | many-to-many | EG0010G18390 EG0002G19720 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | EG0010G18390 | 1 | ||
| Fragaria vesca | Tree-based ortholog | many-to-1 | FV3G30170 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV3G30170 | 1 | ||
| Glycine max | Tree-based ortholog | many-to-many | GM12G07791 GM11G15670 GM13G40460 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GM12G07791 GM11G15670 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-1 | GR13G26600 | 1 | |
| Tree-based ortholog | many-to-many | GR09G10440 GR01G10530 GR04G00200 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GR01G10530 | 1 | ||
| Lotus japonicus | Tree-based ortholog | many-to-1 | LJ5G010300 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ5G010300 | 1 | ||
| Malus domestica | Tree-based ortholog | many-to-many | MD11G009460 MD03G008080 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MD03G008080 | 1 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME00506G00140 | 1 | |
| Tree-based ortholog | many-to-many | ME03750G00500 ME00506G00140 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | ME00506G00140 ME03750G00500 | 2 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT2G093100 | 1 | |
| Tree-based ortholog | many-to-many | MT4G061180 MT2G093100 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT4G061180 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | many-to-many | OS12G01190 OS01G11130 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS12G01190 | 1 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL11G03200 | 1 | |
| Populus trichocarpa | Orthologous gene family | many-to-1 | PT06G13230 | 1 | |
| Tree-based ortholog | many-to-1 | PT09G02620 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PT09G02620 | 1 | ||
| Prunus persica | Tree-based ortholog | many-to-1 | PPE_006G08980 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_006G08980 | 1 | ||
| Ricinus communis | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC29805G00240 | 1 | |
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL06G005190 SL11G072590 | 2 | |
| Tree-based ortholog | many-to-many | SL11G072590 SL06G005190 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL06G005190 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST11G029530 | 1 | |
| Tree-based ortholog | many-to-1 | ST11G029530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST11G029530 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP5G15860 | 1 | |
| Tree-based ortholog | many-to-many | TP5G15860 TP5G15830 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | TP5G15860 TP5G15830 | 2 | ||
| Theobroma cacao | Tree-based ortholog | many-to-1 | TC0009G33010 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0009G33010 | 1 | ||
| Vitis vinifera | Tree-based ortholog | many-to-1 | VV06G04660 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV06G04660 | 1 | ||
| Zea mays | Tree-based ortholog | many-to-many | ZM04G28150 ZM02G25970 ZM03G40880 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | ZM03G40880 ZM02G25970 | 2 |