Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
BR02G23920
(Brassica rapa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Brassica rapa | Orthologous gene family | BR02G23920 BR07G19490 | 2 |  |
| Tree-based ortholog | BR07G19490 BR02G23920 | 2 | ||
| Anchor point | BR07G19490 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | BR02G23920 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | many-to-1 | ATR_00017G02100 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00017G02100 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL2G25690 | 1 | |
| Tree-based ortholog | many-to-1 | AL2G25690 | 1 | ||
| Anchor point | 1-to-1 | AL2G25690 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL2G25690 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT1G76750 | 1 | |
| Tree-based ortholog | many-to-1 | AT1G76750 | 1 | ||
| Anchor point | 1-to-1 | AT1G76750 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G76750 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV3G02610 | 1 | |
| Tree-based ortholog | many-to-1 | BV3G02610 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV3G02610 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-1 | CRU_002G22320 | 1 | |
| Tree-based ortholog | many-to-1 | CRU_002G22320 | 1 | ||
| Anchor point | 1-to-1 | CRU_002G22320 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_002G22320 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-many | CP00049G01020 CP00049G01030 | 2 | |
| Tree-based ortholog | many-to-1 | CP00049G01030 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00049G01030 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL01G10870 | 1 | |
| Tree-based ortholog | many-to-many | CL08G06880 CL01G10870 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL01G10870 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00002G01070 | 1 | |
| Tree-based ortholog | many-to-1 | CS00002G01070 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00002G01070 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-many | CM00004G02470 CM00004G02480 | 2 | |
| Tree-based ortholog | many-to-many | CM00008G02920 CM00004G02480 CM00004G02470 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00004G02470 | 1 | ||
| Fragaria vesca | Tree-based ortholog | many-to-many | FV2G21460 FV2G21480 FV2G14540 ... | 5 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV2G32710 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM09G32770 GM20G30800 | 2 | |
| Tree-based ortholog | many-to-many | GM04G32830 GM06G21540 GM09G32770 ... | 6 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GM09G32770 | 1 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR09G15040 GR09G28580 | 2 | |
| Tree-based ortholog | many-to-many | GR09G15040 GR09G28580 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR09G15040 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-many | LJ3G000930 LJ5G032170 | 2 | |
| Tree-based ortholog | many-to-many | LJ3G000930 LJ5G032170 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | LJ3G000930 LJ5G032170 | 2 | ||
| Malus domestica | Orthologous gene family | many-to-1 | MD10G001950 | 1 | |
| Tree-based ortholog | many-to-1 | MD10G001950 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD10G001950 | 1 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME09120G00180 | 1 | |
| Tree-based ortholog | many-to-1 | ME09120G00180 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME09120G00180 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT3G049180 MT3G049320 MT8G099500 | 3 | |
| Tree-based ortholog | many-to-many | MT3G049180 MT3G049320 MT8G099500 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MT3G049180 MT8G099500 MT3G049320 | 3 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS03G18530 | 1 | |
| Tree-based ortholog | many-to-1 | OS03G18530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS03G18530 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT01G30670 PT01G35360 PT03G19180 ... | 4 | |
| Tree-based ortholog | many-to-many | PT09G07700 PT03G19180 PT01G35360 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT03G19180 PT01G35360 PT09G07700 | 3 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_008G03360 PPE_008G03390 PPE_008G03600 ... | 5 | |
| Tree-based ortholog | many-to-many | PPE_033G00030 PPE_008G03640 PPE_008G03360 ... | 6 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PPE_008G03390 PPE_008G03640 PPE_033G00030 | 3 | ||
| Ricinus communis | Orthologous gene family | many-to-many | RC29693G01100 RC29863G00140 | 2 | |
| Tree-based ortholog | many-to-many | RC29693G01100 RC29863G00140 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29863G00140 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL11G005500 | 1 | |
| Tree-based ortholog | many-to-1 | SL11G005500 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL11G005500 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST11G006130 | 1 | |
| Tree-based ortholog | many-to-many | ST11G006110 ST11G006130 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST11G006130 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP5G31900 | 1 | |
| Tree-based ortholog | many-to-1 | TP5G31900 | 1 | ||
| Anchor point | 1-to-1 | TP5G31900 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP5G31900 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0006G13710 TC0008G15270 | 2 | |
| Tree-based ortholog | many-to-many | TC0006G13710 TC0008G15260 TC0008G15270 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0008G15270 | 1 | ||
| Vitis vinifera | Tree-based ortholog | many-to-many | VV07G06820 VV09G02670 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | VV09G02670 VV07G06820 | 2 | ||
| Zea mays | Orthologous gene family | many-to-1 | ZM09G22990 | 1 | |
| Tree-based ortholog | many-to-1 | ZM09G22990 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM09G22990 | 1 |