Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
BR02G00460
(Brassica rapa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Brassica rapa | Orthologous gene family | BR02G00460 BR04G08820 | 2 |  |
| Tree-based ortholog | BR04G08820 BR02G00460 | 2 | ||
| Anchor point | BR04G08820 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | BR02G00460 BR04G08820 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00177G00280 | 1 | |
| Tree-based ortholog | many-to-1 | ATR_00177G00280 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00177G00280 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL7G38930 | 1 | |
| Tree-based ortholog | many-to-1 | AL7G38930 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL7G38930 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT5G39400 | 1 | |
| Tree-based ortholog | many-to-1 | AT5G39400 | 1 | ||
| Anchor point | 1-to-1 | AT5G39400 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT5G39400 | 1 | ||
| Beta vulgaris | Tree-based ortholog | many-to-many | BV6G22780 BV5G00810 BV9G20010 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV6G22780 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-1 | CRU_007G35240 | 1 | |
| Tree-based ortholog | many-to-1 | CRU_007G35240 | 1 | ||
| Anchor point | 1-to-1 | CRU_007G35240 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_007G35240 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00014G01400 | 1 | |
| Tree-based ortholog | many-to-1 | CP00014G01400 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00014G01400 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | many-to-1 | CR06G15190 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR06G15190 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | many-to-1 | CL10G13500 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL10G13500 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00015G02220 | 1 | |
| Tree-based ortholog | many-to-1 | CS00015G02220 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00015G02220 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00011G07840 | 1 | |
| Tree-based ortholog | many-to-1 | CM00011G07840 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00011G07840 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | many-to-1 | EG0010G12010 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | EG0010G12010 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV6G43310 | 1 | |
| Tree-based ortholog | many-to-1 | FV6G43310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV6G43310 | 1 | ||
| Glycine max | Orthologous gene family | many-to-1 | GM08G26330 | 1 | |
| Tree-based ortholog | many-to-1 | GM08G26330 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GM08G26330 | 1 | ||
| Gossypium raimondii | Orthologous gene family | many-to-1 | GR07G08100 | 1 | |
| Tree-based ortholog | many-to-1 | GR07G08100 | 1 | ||
| Anchor point | 1-to-1 | GR07G08100 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GR07G08100 | 1 | ||
| Lotus japonicus | Tree-based ortholog | many-to-1 | LJ5G037480 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ5G037480 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G510090 MD17G004820 | 2 | |
| Tree-based ortholog | many-to-many | MD00G510090 MD17G004820 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | MD17G004820 MD00G510090 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME11341G01140 | 1 | |
| Tree-based ortholog | many-to-1 | ME11341G01140 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ME11341G01140 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT7G012250 | 1 | |
| Tree-based ortholog | many-to-1 | MT7G012250 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT7G012250 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | many-to-1 | OS12G21890 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS12G21890 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | many-to-many | PP00071G00950 PP00465G00070 PP00121G00440 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00172G00370 PP00121G00440 | 2 | ||
| Populus trichocarpa | Orthologous gene family | many-to-1 | PT17G08970 | 1 | |
| Tree-based ortholog | many-to-1 | PT17G08970 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PT17G08970 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_003G23880 | 1 | |
| Tree-based ortholog | many-to-1 | PPE_003G23880 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_003G23880 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC28124G00020 | 1 | |
| Tree-based ortholog | many-to-1 | RC28124G00020 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC28124G00020 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL03G013310 | 1 | |
| Tree-based ortholog | many-to-1 | SL03G013310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL03G013310 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | many-to-many | ST02G031480 ST01G044870 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST01G044870 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP7G02580 | 1 | |
| Tree-based ortholog | many-to-1 | TP7G02580 | 1 | ||
| Anchor point | 1-to-1 | TP7G02580 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP7G02580 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0004G09440 | 1 | |
| Tree-based ortholog | many-to-1 | TC0004G09440 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0004G09440 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV14G02780 | 1 | |
| Tree-based ortholog | many-to-1 | VV14G02780 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV14G02780 | 1 | ||
| Zea mays | Tree-based ortholog | many-to-1 | ZM02G47080 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM02G47080 | 1 |