Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
BR00G08680
(Brassica rapa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Brassica rapa | Orthologous gene family | BR00G08680 | 1 |  |
| Tree-based ortholog | BR01G40700 BR00G08680 | 2 | ||
| Anchor point | BR01G40700 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | BR00G08680 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | 1-to-1 | ATR_00002G05070 | 1 | |
| Tree-based ortholog | many-to-1 | ATR_00002G05070 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00002G05070 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | 1-to-1 | AL3G04440 | 1 | |
| Tree-based ortholog | many-to-1 | AL3G04440 | 1 | ||
| Anchor point | 1-to-1 | AL3G04440 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL3G04440 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | 1-to-1 | AT3G04730 | 1 | |
| Tree-based ortholog | many-to-1 | AT3G04730 | 1 | ||
| Anchor point | 1-to-1 | AT3G04730 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT3G04730 | 1 | ||
| Beta vulgaris | Tree-based ortholog | many-to-1 | BV0G58960 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV5G13020 | 1 | ||
| Capsella rubella | Orthologous gene family | 1-to-1 | CRU_003G03750 | 1 | |
| Tree-based ortholog | many-to-1 | CRU_003G03750 | 1 | ||
| Anchor point | 1-to-1 | CRU_003G03750 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_003G03750 | 1 | ||
| Carica papaya | Orthologous gene family | 1-to-1 | CP01476G00010 | 1 | |
| Tree-based ortholog | many-to-1 | CP01476G00010 | 1 | ||
| Anchor point | 1-to-1 | CP00058G00260 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP01476G00010 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | many-to-many | CL05G05140 CL06G06390 | 2 | |
| Anchor point | 1-to-1 | CL02G16880 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL06G06390 | 1 | ||
| Citrus sinensis | Orthologous gene family | 1-to-1 | CS00255G00040 | 1 | |
| Tree-based ortholog | many-to-1 | CS00255G00040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00255G00040 | 1 | ||
| Cucumis melo | Tree-based ortholog | many-to-many | CM00069G00400 CM00006G05790 CM00105G00020 | 3 | |
| Anchor point | 1-to-many | CM00003G05050 CM00069G00400 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00105G00020 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-1 | EG0008G35050 | 1 | |
| Tree-based ortholog | many-to-1 | EG0008G35050 | 1 | ||
| Anchor point | 1-to-1 | EG0008G35050 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0008G35050 | 1 | ||
| Fragaria vesca | Tree-based ortholog | many-to-1 | FV1G23810 | 1 | |
| Anchor point | 1-to-1 | FV0G25580 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV1G23810 | 1 | ||
| Glycine max | Tree-based ortholog | many-to-many | GM19G43450 GM03G40760 GM20G36790 | 3 | |
| Anchor point | 1-to-many | GM03G40760 GM19G43450 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM20G35270 GM10G32340 | 2 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-1 | GR13G20070 | 1 | |
| Tree-based ortholog | many-to-1 | GR07G27690 | 1 | ||
| Anchor point | 1-to-1 | GR13G20070 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR13G20070 | 1 | ||
| Lotus japonicus | Tree-based ortholog | many-to-1 | LJ5G024160 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ5G022540 | 1 | ||
| Malus domestica | Tree-based ortholog | many-to-many | MD00G218550 MD13G020550 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD13G020550 MD00G218550 | 2 | ||
| Manihot esculenta | Orthologous gene family | 1-to-1 | ME03802G00650 | 1 | |
| Tree-based ortholog | many-to-many | ME03614G03380 ME03802G00650 | 2 | ||
| Anchor point | 1-to-many | ME03614G03380 ME03802G00650 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME03802G00650 | 1 | ||
| Medicago truncatula | Orthologous gene family | 1-to-1 | MT1G080860 | 1 | |
| Tree-based ortholog | many-to-1 | MT1G080860 | 1 | ||
| Anchor point | 1-to-1 | MT1G080860 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT1G080860 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | 1-to-1 | OS12G40890 | 1 | |
| Tree-based ortholog | many-to-many | OS03G43400 OS12G40890 | 2 | ||
| Anchor point | 1-to-1 | OS03G53150 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS12G40890 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | many-to-many | PP00073G00060 PP00184G00110 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00073G00060 PP00184G00110 | 2 | ||
| Populus trichocarpa | Orthologous gene family | 1-to-1 | PT13G04140 | 1 | |
| Tree-based ortholog | many-to-1 | PT13G04140 | 1 | ||
| Anchor point | 1-to-1 | PT13G04130 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT13G04140 | 1 | ||
| Prunus persica | Orthologous gene family | 1-to-1 | PPE_006G34770 | 1 | |
| Tree-based ortholog | many-to-1 | PPE_006G34770 | 1 | ||
| Anchor point | 1-to-1 | PPE_006G34760 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_006G34770 | 1 | ||
| Ricinus communis | Orthologous gene family | 1-to-1 | RC29598G00190 | 1 | |
| Tree-based ortholog | many-to-1 | RC29598G00190 | 1 | ||
| Anchor point | 1-to-1 | RC29598G00190 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29598G00190 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | 1-to-1 | SL01G097290 | 1 | |
| Tree-based ortholog | many-to-1 | SL01G097290 | 1 | ||
| Anchor point | 1-to-1 | SL01G097290 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL01G097290 | 1 | ||
| Solanum tuberosum | Orthologous gene family | 1-to-1 | ST01G034780 | 1 | |
| Tree-based ortholog | many-to-1 | ST01G034780 | 1 | ||
| Anchor point | 1-to-1 | ST01G034780 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST01G034780 | 1 | ||
| Thellungiella parvula | Orthologous gene family | 1-to-1 | TP3G03580 | 1 | |
| Tree-based ortholog | many-to-1 | TP3G03580 | 1 | ||
| Anchor point | 1-to-1 | TP3G03580 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP3G03580 | 1 | ||
| Theobroma cacao | Orthologous gene family | 1-to-1 | TC0005G28180 | 1 | |
| Tree-based ortholog | many-to-1 | TC0005G28180 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0005G28180 | 1 | ||
| Vitis vinifera | Orthologous gene family | 1-to-1 | VV07G01540 | 1 | |
| Tree-based ortholog | many-to-many | VV05G05920 VV14G15240 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV07G01540 | 1 | ||
| Zea mays | Orthologous gene family | 1-to-1 | ZM03G16030 | 1 | |
| Tree-based ortholog | many-to-1 | ZM01G28860 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM03G16030 | 1 |