Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
ATR_00171G00360
(Amborella trichopoda)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | ATR_00079G00490 ATR_00171G00360 | 2 |  |
| Tree-based ortholog | ATR_00171G00360 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | ATR_00171G00360 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL1G42540 AL3G19860 AL6G23200 | 3 | |
| Tree-based ortholog | 1-to-many | AL2G19980 AL4G00920 AL6G23200 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL6G23200 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT1G48840 AT3G18350 AT5G23390 | 3 | |
| Tree-based ortholog | 1-to-many | AT1G71240 AT2G21720 AT5G23390 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT5G23390 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-many | BV5G05390 BV9G11560 | 2 | |
| Tree-based ortholog | 1-to-many | BV9G11560 BV0G06310 BV5G21600 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV9G11560 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR01G31160 BR05G18590 BR06G24940 | 3 | |
| Tree-based ortholog | 1-to-many | BR07G27670 BR09G44330 BR04G12120 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR06G24940 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_001G36010 CRU_003G17330 CRU_006G20520 | 3 | |
| Tree-based ortholog | 1-to-many | CRU_002G17080 CRU_004G00740 CRU_006G20520 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_006G20520 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00003G04950 | 1 | |
| Tree-based ortholog | 1-to-many | CP31165G00010 CP00113G00670 CP00161G00160 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00003G04950 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-many | CL01G14530 CL06G15330 | 2 | |
| Tree-based ortholog | 1-to-many | CL01G14530 CL09G17250 CL04G05520 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL01G14530 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-many | CS00008G00940 CS00090G00190 | 2 | |
| Tree-based ortholog | 1-to-many | CS00008G00940 CS00194G00020 CS00029G01410 | 3 | ||
| Anchor point | N/A | CS00008G00940 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00008G00940 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-many | CM00005G00220 CM00030G02430 | 2 | |
| Tree-based ortholog | 1-to-many | CM00005G00220 CM00012G01010 CM00010G00370 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00005G00220 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0002G06310 EG0007G20390 EG0011G18450 | 3 | |
| Tree-based ortholog | 1-to-many | EG0007G20390 EG0007G04240 EG0001G17740 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0007G20390 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-many | FV4G23050 FV5G35930 | 2 | |
| Tree-based ortholog | 1-to-many | FV4G23050 FV1G22850 | 2 | ||
| Anchor point | N/A | FV4G23050 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV4G23050 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM07G10300 GM09G31590 GM10G43510 ... | 4 | |
| Tree-based ortholog | 1-to-many | GM20G23280 GM10G43510 GM15G05220 ... | 7 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM10G43510 GM20G23280 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR04G11210 GR06G06050 GR12G13650 | 3 | |
| Tree-based ortholog | 1-to-many | GR12G13650 GR02G20950 GR05G26050 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR12G13650 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ5G040520 | 1 | |
| Tree-based ortholog | 1-to-many | LJ5G040520 LJ1G054880 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ5G040520 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD06G018170 MD13G000080 MD14G021310 | 3 | |
| Tree-based ortholog | 1-to-many | MD13G000080 MD08G021520 MD00G484430 ... | 9 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD13G000080 | 1 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME05875G02490 ME06673G00020 | 2 | |
| Tree-based ortholog | 1-to-many | ME06914G00640 ME05875G02500 ME03614G02010 ... | 4 | ||
| Anchor point | N/A | ME05875G02490 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME05875G02490 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT1G115260 MT6G084190 | 2 | |
| Tree-based ortholog | 1-to-many | MT1G115260 MT2G007330 MT7G086350 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT1G115260 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS02G42530 OS04G58100 OS05G17990 ... | 4 | |
| Tree-based ortholog | 1-to-many | OS02G42530 OS04G58100 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS02G42530 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00022G02140 PP00028G02110 PP00364G00220 | 3 | |
| Tree-based ortholog | 1-to-many | PP00048G00780 PP00065G01240 PP00022G02140 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00028G02110 PP00364G00220 | 2 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT08G00300 PT12G05580 PT15G04650 | 3 | |
| Tree-based ortholog | 1-to-many | PT08G00300 PT01G21020 PT13G06270 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT08G00300 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_001G36020 PPE_005G22460 | 2 | |
| Tree-based ortholog | 1-to-many | PPE_001G36020 PPE_001G54850 PPE_007G02300 | 3 | ||
| Anchor point | N/A | PPE_001G36020 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_001G36020 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-many | RC29974G00120 RC30131G04240 | 2 | |
| Tree-based ortholog | 1-to-many | RC30131G04240 RC30116G00030 RC30072G00340 | 3 | ||
| Anchor point | N/A | RC30131G04240 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30131G04240 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL02G050140 SL03G119400 | 2 | |
| Tree-based ortholog | 1-to-many | SL02G050180 SL01G104300 SL04G007290 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL03G119400 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST02G005770 ST03G032950 | 2 | |
| Tree-based ortholog | 1-to-many | ST02G005760 ST01G041310 ST04G006510 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST02G005770 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP1G35730 TP2G23780 TP3G16460 | 3 | |
| Tree-based ortholog | 1-to-many | TP5G26440 TP4G00880 TP2G23780 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP2G23780 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0002G14630 TC0003G03510 | 2 | |
| Tree-based ortholog | 1-to-many | TC0002G14630 TC0002G03790 TC0005G24440 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0002G14630 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | VV10G07410 VV17G06070 | 2 | |
| Tree-based ortholog | 1-to-many | VV10G07410 VV12G05350 VV08G05430 | 3 | ||
| Anchor point | N/A | VV10G07410 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV10G07410 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM01G57290 ZM04G19590 ZM10G26450 | 3 | |
| Tree-based ortholog | 1-to-many | ZM04G19590 ZM10G26450 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM04G19590 | 1 |